miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9024 3' -56.6 NC_002512.2 + 96761 0.66 0.959466
Target:  5'- gGGCCcCGUCCGagCGGcgcCAUGCAgAUCu -3'
miRNA:   3'- -CCGGcGCAGGCa-GCCa--GUGUGUgUAG- -5'
9024 3' -56.6 NC_002512.2 + 170587 0.66 0.959466
Target:  5'- cGCCGUGUCCcgacccgaGUCcGUCgaGCACgACGUCa -3'
miRNA:   3'- cCGGCGCAGG--------CAGcCAG--UGUG-UGUAG- -5'
9024 3' -56.6 NC_002512.2 + 211964 0.66 0.959466
Target:  5'- cGGCUGCuUCCGUCaGGaCGCgGC-CGUCg -3'
miRNA:   3'- -CCGGCGcAGGCAG-CCaGUG-UGuGUAG- -5'
9024 3' -56.6 NC_002512.2 + 194397 0.66 0.959466
Target:  5'- uGGCaCGC-UCCGccaCGGcacgaccgUCAUACACGUCg -3'
miRNA:   3'- -CCG-GCGcAGGCa--GCC--------AGUGUGUGUAG- -5'
9024 3' -56.6 NC_002512.2 + 156899 0.66 0.959466
Target:  5'- aGGUCGUGUUggguacacaCGUCGuG-CACGCACGUa -3'
miRNA:   3'- -CCGGCGCAG---------GCAGC-CaGUGUGUGUAg -5'
9024 3' -56.6 NC_002512.2 + 110757 0.66 0.959466
Target:  5'- cGUCGCGUCC--CGGUaGCGCACcUCc -3'
miRNA:   3'- cCGGCGCAGGcaGCCAgUGUGUGuAG- -5'
9024 3' -56.6 NC_002512.2 + 83971 0.66 0.959466
Target:  5'- cGGCgGCGgaugcCCGgcgcggggCGGUCGCGCAgCuUCa -3'
miRNA:   3'- -CCGgCGCa----GGCa-------GCCAGUGUGU-GuAG- -5'
9024 3' -56.6 NC_002512.2 + 122686 0.66 0.959466
Target:  5'- cGGCCGCGgcCCGgcuGGUgccCGUGCACGUCg -3'
miRNA:   3'- -CCGGCGCa-GGCag-CCA---GUGUGUGUAG- -5'
9024 3' -56.6 NC_002512.2 + 137535 0.66 0.957348
Target:  5'- uGCuCGCGUCCGcggcgacggguUCGGUCGCggaaaccgccccgagACACGa- -3'
miRNA:   3'- cCG-GCGCAGGC-----------AGCCAGUG---------------UGUGUag -5'
9024 3' -56.6 NC_002512.2 + 34851 0.66 0.956261
Target:  5'- gGGCCGCGgcggcuucuucgucgCCGUCG-UCGC-CGCcgCc -3'
miRNA:   3'- -CCGGCGCa--------------GGCAGCcAGUGuGUGuaG- -5'
9024 3' -56.6 NC_002512.2 + 207689 0.66 0.955895
Target:  5'- cGGCCgaaGCGcUCCGUCaucGUCAuCGC-CAUCg -3'
miRNA:   3'- -CCGG---CGC-AGGCAGc--CAGU-GUGuGUAG- -5'
9024 3' -56.6 NC_002512.2 + 227433 0.66 0.955895
Target:  5'- cGGgCGCGggCCG-CGGUCACcuuCGCGc- -3'
miRNA:   3'- -CCgGCGCa-GGCaGCCAGUGu--GUGUag -5'
9024 3' -56.6 NC_002512.2 + 80036 0.66 0.955895
Target:  5'- cGCUGCuUUCGUCGucguccucGUCGCGCGgGUCg -3'
miRNA:   3'- cCGGCGcAGGCAGC--------CAGUGUGUgUAG- -5'
9024 3' -56.6 NC_002512.2 + 82117 0.66 0.955895
Target:  5'- aGCCGCGa--GUCGGgacggccgcgcUgGCGCACGUCu -3'
miRNA:   3'- cCGGCGCaggCAGCC-----------AgUGUGUGUAG- -5'
9024 3' -56.6 NC_002512.2 + 111864 0.66 0.955895
Target:  5'- cGCCGCGUCC-UCG-UCGUACGgGUCc -3'
miRNA:   3'- cCGGCGCAGGcAGCcAGUGUGUgUAG- -5'
9024 3' -56.6 NC_002512.2 + 141968 0.66 0.955895
Target:  5'- aGGUacaGCGUguaGUCGGUC-CGCAgAUCg -3'
miRNA:   3'- -CCGg--CGCAgg-CAGCCAGuGUGUgUAG- -5'
9024 3' -56.6 NC_002512.2 + 83166 0.66 0.955156
Target:  5'- cGGCCGCGgccgccgccccgCCGUCGucuccgucgcccGUCcGCGCGCGg- -3'
miRNA:   3'- -CCGGCGCa-----------GGCAGC------------CAG-UGUGUGUag -5'
9024 3' -56.6 NC_002512.2 + 45246 0.66 0.953653
Target:  5'- cGcCCGCGgacucgCCGUCGGccgccggcggggcgcUCGCGCuCGUCu -3'
miRNA:   3'- cC-GGCGCa-----GGCAGCC---------------AGUGUGuGUAG- -5'
9024 3' -56.6 NC_002512.2 + 20506 0.66 0.952116
Target:  5'- uGGCCGagGUCgaaGUCGGg-ACACACgGUCg -3'
miRNA:   3'- -CCGGCg-CAGg--CAGCCagUGUGUG-UAG- -5'
9024 3' -56.6 NC_002512.2 + 43009 0.66 0.952116
Target:  5'- aGGCUGCgGUCCGagGcGUUGgGCAgGUCg -3'
miRNA:   3'- -CCGGCG-CAGGCagC-CAGUgUGUgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.