miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9024 5' -56.7 NC_002512.2 + 206131 0.66 0.954683
Target:  5'- cGCAGCgGGGCGuCCGgUCGccagACGGUCa-- -3'
miRNA:   3'- -UGUUG-CCCGU-GGUgAGC----UGCCAGcuc -5'
9024 5' -56.7 NC_002512.2 + 132999 0.66 0.954683
Target:  5'- -gGACGGGCcaugGCCGC-CGACGGagaacUGGGa -3'
miRNA:   3'- ugUUGCCCG----UGGUGaGCUGCCa----GCUC- -5'
9024 5' -56.7 NC_002512.2 + 155360 0.66 0.954683
Target:  5'- aAC-ACGaGCGgCGCUCGA-GGUCGGGg -3'
miRNA:   3'- -UGuUGCcCGUgGUGAGCUgCCAGCUC- -5'
9024 5' -56.7 NC_002512.2 + 212152 0.66 0.95083
Target:  5'- uCGGCGGGCACUggcgGCggGACGGcUGGGc -3'
miRNA:   3'- uGUUGCCCGUGG----UGagCUGCCaGCUC- -5'
9024 5' -56.7 NC_002512.2 + 222634 0.66 0.95083
Target:  5'- cCGACGGaCGCCGCUccgccgCGACGGcCGGc -3'
miRNA:   3'- uGUUGCCcGUGGUGA------GCUGCCaGCUc -5'
9024 5' -56.7 NC_002512.2 + 64111 0.66 0.95083
Target:  5'- uCGACGGGCGCgcaggaGC-CGAUGGUgaaGAGg -3'
miRNA:   3'- uGUUGCCCGUGg-----UGaGCUGCCAg--CUC- -5'
9024 5' -56.7 NC_002512.2 + 41234 0.66 0.949632
Target:  5'- gACGACGGGcCGCCGC-CGccgccggcgcccuuGCGGccCGAGc -3'
miRNA:   3'- -UGUUGCCC-GUGGUGaGC--------------UGCCa-GCUC- -5'
9024 5' -56.7 NC_002512.2 + 160907 0.66 0.949632
Target:  5'- gGCGGCcgGGGCAagggacgcggacagUCGCUgCGGCGGUgGGGg -3'
miRNA:   3'- -UGUUG--CCCGU--------------GGUGA-GCUGCCAgCUC- -5'
9024 5' -56.7 NC_002512.2 + 74399 0.66 0.948416
Target:  5'- uCAugGGGguCCggacggugccgacgaACUCG-CGGUCGAc -3'
miRNA:   3'- uGUugCCCguGG---------------UGAGCuGCCAGCUc -5'
9024 5' -56.7 NC_002512.2 + 14900 0.66 0.946764
Target:  5'- cCGACGGGCAUC-C-CGA-GGUCGGc -3'
miRNA:   3'- uGUUGCCCGUGGuGaGCUgCCAGCUc -5'
9024 5' -56.7 NC_002512.2 + 227673 0.66 0.946764
Target:  5'- aGCGGC-GGCGCCGC-CGGCGacCGAGa -3'
miRNA:   3'- -UGUUGcCCGUGGUGaGCUGCcaGCUC- -5'
9024 5' -56.7 NC_002512.2 + 120608 0.66 0.946345
Target:  5'- -gAGCGGGCGCCggugagaGCgggaGGCGG-CGGGa -3'
miRNA:   3'- ugUUGCCCGUGG-------UGag--CUGCCaGCUC- -5'
9024 5' -56.7 NC_002512.2 + 15687 0.66 0.945502
Target:  5'- gGCAGCGGGCGcagcggguccuccuCCGCgacgaUGACGGgcUCGAc -3'
miRNA:   3'- -UGUUGCCCGU--------------GGUGa----GCUGCC--AGCUc -5'
9024 5' -56.7 NC_002512.2 + 116175 0.66 0.944221
Target:  5'- gGCGcCGGGCGaguuCCACgCGcugcgggccaggcagGCGGUCGAGc -3'
miRNA:   3'- -UGUuGCCCGU----GGUGaGC---------------UGCCAGCUC- -5'
9024 5' -56.7 NC_002512.2 + 73606 0.66 0.942482
Target:  5'- cACGACGGGC--CACUCGGagaaGUCGAa -3'
miRNA:   3'- -UGUUGCCCGugGUGAGCUgc--CAGCUc -5'
9024 5' -56.7 NC_002512.2 + 129977 0.66 0.942042
Target:  5'- uCGGCGGGCccccggcGCC-CUCGACGGgccgCGc- -3'
miRNA:   3'- uGUUGCCCG-------UGGuGAGCUGCCa---GCuc -5'
9024 5' -56.7 NC_002512.2 + 105773 0.66 0.937983
Target:  5'- gAUAACcuGGGCGUCGCauggUCGACGG-CGAGg -3'
miRNA:   3'- -UGUUG--CCCGUGGUG----AGCUGCCaGCUC- -5'
9024 5' -56.7 NC_002512.2 + 6442 0.66 0.937983
Target:  5'- -uGGCGGGCGCCGa--GACaggGGUCGGc -3'
miRNA:   3'- ugUUGCCCGUGGUgagCUG---CCAGCUc -5'
9024 5' -56.7 NC_002512.2 + 169064 0.66 0.937983
Target:  5'- cGCGAgGGGCuCCGCggCGGCGGcgUCGcGg -3'
miRNA:   3'- -UGUUgCCCGuGGUGa-GCUGCC--AGCuC- -5'
9024 5' -56.7 NC_002512.2 + 35257 0.66 0.937983
Target:  5'- -gGACGGGCAggucccCCGCggCGACGGcCGcGg -3'
miRNA:   3'- ugUUGCCCGU------GGUGa-GCUGCCaGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.