miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 5' -59.2 NC_002512.2 + 159956 1.08 0.003176
Target:  5'- gACCGGAGACCUACCGGGAGACCUCGAc -3'
miRNA:   3'- -UGGCCUCUGGAUGGCCCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 220318 0.8 0.200859
Target:  5'- gGCCGGGGGCCgggcuCCGGGGGGCCggaCGGc -3'
miRNA:   3'- -UGGCCUCUGGau---GGCCCUCUGGa--GCU- -5'
9025 5' -59.2 NC_002512.2 + 224353 0.78 0.295622
Target:  5'- cGCCGGGG-UCgcgGgCGGGAGACCUCGGu -3'
miRNA:   3'- -UGGCCUCuGGa--UgGCCCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 130957 0.78 0.295622
Target:  5'- -gCGGAcGACCgccuuaUAUCGGGAGACCUCGGa -3'
miRNA:   3'- ugGCCU-CUGG------AUGGCCCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 225794 0.77 0.301503
Target:  5'- cGCCGGccGGGCCgcgggcgGCCGGGuggccugGGACCUCGAg -3'
miRNA:   3'- -UGGCC--UCUGGa------UGGCCC-------UCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 126253 0.77 0.308812
Target:  5'- gGCCGGGuguccgaagccGACCUccagcgguACCGGGAGGCCgUCGAc -3'
miRNA:   3'- -UGGCCU-----------CUGGA--------UGGCCCUCUGG-AGCU- -5'
9025 5' -59.2 NC_002512.2 + 96393 0.77 0.336526
Target:  5'- aACCGGGGACUcACCGGc-GGCCUCGGa -3'
miRNA:   3'- -UGGCCUCUGGaUGGCCcuCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 120824 0.76 0.356234
Target:  5'- cGCgCGGGGACCUGCUGGGcGAcgcguacuuccuccCCUCGAa -3'
miRNA:   3'- -UG-GCCUCUGGAUGGCCCuCU--------------GGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 150214 0.76 0.366009
Target:  5'- cCCGGAGGCC-GCCGGGgAGGCgaUCGAg -3'
miRNA:   3'- uGGCCUCUGGaUGGCCC-UCUGg-AGCU- -5'
9025 5' -59.2 NC_002512.2 + 119656 0.74 0.464522
Target:  5'- gUgGGAGACCaguucCUGGGAGGCCUUGAc -3'
miRNA:   3'- uGgCCUCUGGau---GGCCCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 228170 0.74 0.464522
Target:  5'- aGCCGGAGcgggagcggcACCguCCGGGAGACCuacuUCGAg -3'
miRNA:   3'- -UGGCCUC----------UGGauGGCCCUCUGG----AGCU- -5'
9025 5' -59.2 NC_002512.2 + 102868 0.74 0.473351
Target:  5'- gACCGGGGggacGCCUA-CGGGGGACC-CGGg -3'
miRNA:   3'- -UGGCCUC----UGGAUgGCCCUCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 110566 0.73 0.509468
Target:  5'- cGCgGGAGGuCCUGCCGGGucaGGAUCUCc- -3'
miRNA:   3'- -UGgCCUCU-GGAUGGCCC---UCUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 128653 0.73 0.509468
Target:  5'- gGCCGGGGGaucgagcuccuCCUGCugCGGGAGACCcuggCGAa -3'
miRNA:   3'- -UGGCCUCU-----------GGAUG--GCCCUCUGGa---GCU- -5'
9025 5' -59.2 NC_002512.2 + 153632 0.73 0.51868
Target:  5'- uACCGGuaGGACCUACCGGuaGGACCUa-- -3'
miRNA:   3'- -UGGCC--UCUGGAUGGCCc-UCUGGAgcu -5'
9025 5' -59.2 NC_002512.2 + 109031 0.72 0.556136
Target:  5'- -gCGGGGACgaggACCGGGGGGgCUCGGg -3'
miRNA:   3'- ugGCCUCUGga--UGGCCCUCUgGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 170407 0.72 0.584734
Target:  5'- gGCCGcucGAGACCcGCUGGcGAgGGCCUCGGa -3'
miRNA:   3'- -UGGC---CUCUGGaUGGCC-CU-CUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 133585 0.71 0.594336
Target:  5'- cGCCGGGGACCcgAgCGGGccGGCCUCc- -3'
miRNA:   3'- -UGGCCUCUGGa-UgGCCCu-CUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 184391 0.71 0.594336
Target:  5'- uUCGGcguGGCCgccGCCGGGGGGCgCUCGGc -3'
miRNA:   3'- uGGCCu--CUGGa--UGGCCCUCUG-GAGCU- -5'
9025 5' -59.2 NC_002512.2 + 223711 0.71 0.595297
Target:  5'- gGCCGGcGACUcgcacggggaggacgACCGGGAGACCgUCGu -3'
miRNA:   3'- -UGGCCuCUGGa--------------UGGCCCUCUGG-AGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.