miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 5' -59.2 NC_002512.2 + 2307 0.66 0.883144
Target:  5'- -gCGGGGcUCUGCUGcgccggcgguccGGAGGCCUCGGu -3'
miRNA:   3'- ugGCCUCuGGAUGGC------------CCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 2809 0.66 0.895922
Target:  5'- gGCCGGcgGGACCcgGCgCGGGcgcGGGCC-CGGa -3'
miRNA:   3'- -UGGCC--UCUGGa-UG-GCCC---UCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 4202 0.67 0.824464
Target:  5'- cGCCGGAGAUCggugggagcgGCCGcGGggagcgGGACgUCGAg -3'
miRNA:   3'- -UGGCCUCUGGa---------UGGC-CC------UCUGgAGCU- -5'
9025 5' -59.2 NC_002512.2 + 7918 0.69 0.725565
Target:  5'- cGCCGGucgaacGACCUccgguuucguugcgGCCGGGcggauGAUCUCGAa -3'
miRNA:   3'- -UGGCCu-----CUGGA--------------UGGCCCu----CUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 11291 0.67 0.847802
Target:  5'- cGCgGGcgAGACCc-CgGGGAGACCUcCGAg -3'
miRNA:   3'- -UGgCC--UCUGGauGgCCCUCUGGA-GCU- -5'
9025 5' -59.2 NC_002512.2 + 11601 0.68 0.791198
Target:  5'- gGCCGGGGACCccgagGCCGaGGAGAa--UGAg -3'
miRNA:   3'- -UGGCCUCUGGa----UGGC-CCUCUggaGCU- -5'
9025 5' -59.2 NC_002512.2 + 16119 0.67 0.832408
Target:  5'- aGCCGGuuGACCgcgaucaucUGCCGGGcGGCCUgCGc -3'
miRNA:   3'- -UGGCCu-CUGG---------AUGGCCCuCUGGA-GCu -5'
9025 5' -59.2 NC_002512.2 + 21457 0.71 0.642588
Target:  5'- gAUCGGGGGCCggcGCCGGGAGcggcGCC-CGu -3'
miRNA:   3'- -UGGCCUCUGGa--UGGCCCUC----UGGaGCu -5'
9025 5' -59.2 NC_002512.2 + 22086 0.69 0.73762
Target:  5'- uUCGGAGAgCUcguccgGCCGGGAGACgaCGc -3'
miRNA:   3'- uGGCCUCUgGA------UGGCCCUCUGgaGCu -5'
9025 5' -59.2 NC_002512.2 + 23002 0.66 0.862499
Target:  5'- cGCUGGuGACCUACCcgucGGcGAgCUCGGc -3'
miRNA:   3'- -UGGCCuCUGGAUGGc---CCuCUgGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 31145 0.69 0.732072
Target:  5'- gGCCGucuucgcGGACCUGgcCCGGGAgacgcaccgccugguGACCUCGAc -3'
miRNA:   3'- -UGGCc------UCUGGAU--GGCCCU---------------CUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 31455 0.7 0.70016
Target:  5'- uGCCccaaAGACCUGCUGGGccACCUCGGa -3'
miRNA:   3'- -UGGcc--UCUGGAUGGCCCucUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 32466 0.68 0.791198
Target:  5'- uGCgGGAGAUgUACUGGGGcucGAUgUCGAa -3'
miRNA:   3'- -UGgCCUCUGgAUGGCCCU---CUGgAGCU- -5'
9025 5' -59.2 NC_002512.2 + 32909 0.66 0.862499
Target:  5'- aACUGG-GGCCgauucgagUACCuGGAGGCCgUCGAg -3'
miRNA:   3'- -UGGCCuCUGG--------AUGGcCCUCUGG-AGCU- -5'
9025 5' -59.2 NC_002512.2 + 33686 0.7 0.671503
Target:  5'- cGCCGGAGGCUcGCCaGGGAcccGGCCgUCGc -3'
miRNA:   3'- -UGGCCUCUGGaUGG-CCCU---CUGG-AGCu -5'
9025 5' -59.2 NC_002512.2 + 34957 0.68 0.781671
Target:  5'- -gCGGAGcgGCCgcgACCGGGuccggcuGGGCCUCGc -3'
miRNA:   3'- ugGCCUC--UGGa--UGGCCC-------UCUGGAGCu -5'
9025 5' -59.2 NC_002512.2 + 36571 0.67 0.84019
Target:  5'- aGCCgGGAGGCg-GCgGuGGAGACCUCc- -3'
miRNA:   3'- -UGG-CCUCUGgaUGgC-CCUCUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 36914 0.71 0.642588
Target:  5'- cGCCGGAgGACCaAgCGGGAGgACC-CGGg -3'
miRNA:   3'- -UGGCCU-CUGGaUgGCCCUC-UGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 38348 0.67 0.847802
Target:  5'- -gCGGGGAUCcGCCGGGucGCC-CGAc -3'
miRNA:   3'- ugGCCUCUGGaUGGCCCucUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 38670 0.69 0.73762
Target:  5'- gGCCGGGGACgCccCCGGGgaAGACCgagcCGAc -3'
miRNA:   3'- -UGGCCUCUG-GauGGCCC--UCUGGa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.