miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 5' -59.2 NC_002512.2 + 198160 0.66 0.869572
Target:  5'- gGCCGGGucggcGCCgGCCGGcGGACCUCc- -3'
miRNA:   3'- -UGGCCUc----UGGaUGGCCcUCUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 119550 0.66 0.869572
Target:  5'- -gCGGGGAgCggggACCGGGcGGACCgCGGg -3'
miRNA:   3'- ugGCCUCUgGa---UGGCCC-UCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 108558 0.66 0.869572
Target:  5'- cGCCGGAGcgaggucaccguGCCgaucuuuuUCGGGGGGCCcCGGg -3'
miRNA:   3'- -UGGCCUC------------UGGau------GGCCCUCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 124786 0.66 0.869572
Target:  5'- uGCCGG-GACC--CgGGGAGACacgUCGAc -3'
miRNA:   3'- -UGGCCuCUGGauGgCCCUCUGg--AGCU- -5'
9025 5' -59.2 NC_002512.2 + 101702 0.66 0.869572
Target:  5'- cGCCGGcGGCCcGCUcGGcGACCUCGu -3'
miRNA:   3'- -UGGCCuCUGGaUGGcCCuCUGGAGCu -5'
9025 5' -59.2 NC_002512.2 + 94581 0.66 0.869572
Target:  5'- cUCGGGGACC-GCCGGacaggcgaacuGGGGCC-CGAa -3'
miRNA:   3'- uGGCCUCUGGaUGGCC-----------CUCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 41653 0.66 0.869572
Target:  5'- gACCGGAGAC--GCaCGGucgaGAGACCUgGGc -3'
miRNA:   3'- -UGGCCUCUGgaUG-GCC----CUCUGGAgCU- -5'
9025 5' -59.2 NC_002512.2 + 122881 0.66 0.869572
Target:  5'- gUCGGccGCCUACCgagaGGGAGACgaCGAg -3'
miRNA:   3'- uGGCCucUGGAUGG----CCCUCUGgaGCU- -5'
9025 5' -59.2 NC_002512.2 + 123720 0.66 0.86747
Target:  5'- uCCGGguggaccugugcucGGACCUGCgGGGucGGACCUggCGGa -3'
miRNA:   3'- uGGCC--------------UCUGGAUGgCCC--UCUGGA--GCU- -5'
9025 5' -59.2 NC_002512.2 + 130236 0.66 0.862499
Target:  5'- uGCCGGGGAUCgGCuCGGGcgccGGGCCcucCGAg -3'
miRNA:   3'- -UGGCCUCUGGaUG-GCCC----UCUGGa--GCU- -5'
9025 5' -59.2 NC_002512.2 + 121377 0.66 0.862499
Target:  5'- gGCCGGucGGGC--GCCGGGcccGGCCUCGc -3'
miRNA:   3'- -UGGCC--UCUGgaUGGCCCu--CUGGAGCu -5'
9025 5' -59.2 NC_002512.2 + 23002 0.66 0.862499
Target:  5'- cGCUGGuGACCUACCcgucGGcGAgCUCGGc -3'
miRNA:   3'- -UGGCCuCUGGAUGGc---CCuCUgGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 131825 0.66 0.862499
Target:  5'- cCCgGGAGACgaGCCGGGAGgaGCCgggCa- -3'
miRNA:   3'- uGG-CCUCUGgaUGGCCCUC--UGGa--Gcu -5'
9025 5' -59.2 NC_002512.2 + 32909 0.66 0.862499
Target:  5'- aACUGG-GGCCgauucgagUACCuGGAGGCCgUCGAg -3'
miRNA:   3'- -UGGCCuCUGG--------AUGGcCCUCUGG-AGCU- -5'
9025 5' -59.2 NC_002512.2 + 144569 0.67 0.855241
Target:  5'- aACCGGcGACCUACgucgagCGGcAGGCgUCGAu -3'
miRNA:   3'- -UGGCCuCUGGAUG------GCCcUCUGgAGCU- -5'
9025 5' -59.2 NC_002512.2 + 165653 0.67 0.854505
Target:  5'- uUCGGGGGCCUucccgagGCCGaGGu--CCUCGAu -3'
miRNA:   3'- uGGCCUCUGGA-------UGGC-CCucuGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 139487 0.67 0.847802
Target:  5'- -aCGGGcacGGCCggcGCCGGcaAGACCUCGAg -3'
miRNA:   3'- ugGCCU---CUGGa--UGGCCc-UCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 131671 0.67 0.847802
Target:  5'- cCCGGAGACUgcUCGGGaAGGuCCcCGAg -3'
miRNA:   3'- uGGCCUCUGGauGGCCC-UCU-GGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 38348 0.67 0.847802
Target:  5'- -gCGGGGAUCcGCCGGGucGCC-CGAc -3'
miRNA:   3'- ugGCCUCUGGaUGGCCCucUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 11291 0.67 0.847802
Target:  5'- cGCgGGcgAGACCc-CgGGGAGACCUcCGAg -3'
miRNA:   3'- -UGgCC--UCUGGauGgCCCUCUGGA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.