miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9027 3' -60.9 NC_002512.2 + 123105 0.66 0.852119
Target:  5'- uCCgGCgGaACCGUCCCGCcgccgucggcGGccGUCCCGg -3'
miRNA:   3'- -GG-CGaC-UGGCAGGGCGu---------CCa-CAGGGC- -5'
9027 3' -60.9 NC_002512.2 + 109168 0.66 0.852119
Target:  5'- cUCGCgcggGGCCGggaugaagagCCC-CAGGUGcgCCCGc -3'
miRNA:   3'- -GGCGa---CUGGCa---------GGGcGUCCACa-GGGC- -5'
9027 3' -60.9 NC_002512.2 + 39912 0.66 0.852119
Target:  5'- cCUGUaGACCgGUCCCGCAGcucgaagagGUCCgGg -3'
miRNA:   3'- -GGCGaCUGG-CAGGGCGUCca-------CAGGgC- -5'
9027 3' -60.9 NC_002512.2 + 96660 0.66 0.852119
Target:  5'- gCCGCccucCCGUCCuCGCuGGgcggacgacGUCCCGa -3'
miRNA:   3'- -GGCGacu-GGCAGG-GCGuCCa--------CAGGGC- -5'
9027 3' -60.9 NC_002512.2 + 132736 0.66 0.852119
Target:  5'- gCCGCaGGCgcagcgcggcguCGUCCCGCAGGcgggcgaagGUCUCc -3'
miRNA:   3'- -GGCGaCUG------------GCAGGGCGUCCa--------CAGGGc -5'
9027 3' -60.9 NC_002512.2 + 188486 0.66 0.852119
Target:  5'- -aGCgagGAgCCGUucaCCCGCaacgAGGUGUCCUa -3'
miRNA:   3'- ggCGa--CU-GGCA---GGGCG----UCCACAGGGc -5'
9027 3' -60.9 NC_002512.2 + 108802 0.66 0.852119
Target:  5'- gCCGCUGcgggcGCUGUUCCGCgaggcgugcgAGGUGUacggagcgUCCGa -3'
miRNA:   3'- -GGCGAC-----UGGCAGGGCG----------UCCACA--------GGGC- -5'
9027 3' -60.9 NC_002512.2 + 108429 0.66 0.852119
Target:  5'- gCCGCccggGGCCGggggCCGgGGG-GUCCCu -3'
miRNA:   3'- -GGCGa---CUGGCag--GGCgUCCaCAGGGc -5'
9027 3' -60.9 NC_002512.2 + 72401 0.66 0.84474
Target:  5'- aCGCUGAUCGUUCuCGC-GGUcGUCUgCGg -3'
miRNA:   3'- gGCGACUGGCAGG-GCGuCCA-CAGG-GC- -5'
9027 3' -60.9 NC_002512.2 + 11239 0.66 0.837194
Target:  5'- uCCGCcu-CCGUCCgccgggcgCGaCAGG-GUCCCGa -3'
miRNA:   3'- -GGCGacuGGCAGG--------GC-GUCCaCAGGGC- -5'
9027 3' -60.9 NC_002512.2 + 122674 0.66 0.837194
Target:  5'- aCCGCggcuccccGGCCGcggCCCgGCuGGUG-CCCGu -3'
miRNA:   3'- -GGCGa-------CUGGCa--GGG-CGuCCACaGGGC- -5'
9027 3' -60.9 NC_002512.2 + 178607 0.66 0.837194
Target:  5'- gCCGCcGACucggucgccgCGUCCaCGUAGGUuUCCCc -3'
miRNA:   3'- -GGCGaCUG----------GCAGG-GCGUCCAcAGGGc -5'
9027 3' -60.9 NC_002512.2 + 171964 0.66 0.837194
Target:  5'- cCCGCUcGCCGUCCuCGCGcucuuaGUCCUGc -3'
miRNA:   3'- -GGCGAcUGGCAGG-GCGUcca---CAGGGC- -5'
9027 3' -60.9 NC_002512.2 + 172699 0.66 0.837194
Target:  5'- gCGC-GACCGcUgCCGCgAGGUG-CCCu -3'
miRNA:   3'- gGCGaCUGGC-AgGGCG-UCCACaGGGc -5'
9027 3' -60.9 NC_002512.2 + 45311 0.66 0.829488
Target:  5'- gCCGCccuGCCGgCCCGCGGGUcggagggccGUCCg- -3'
miRNA:   3'- -GGCGac-UGGCaGGGCGUCCA---------CAGGgc -5'
9027 3' -60.9 NC_002512.2 + 118088 0.66 0.829488
Target:  5'- uUCGCggcGACCaacaaCCCGUGGGcGUCCCa -3'
miRNA:   3'- -GGCGa--CUGGca---GGGCGUCCaCAGGGc -5'
9027 3' -60.9 NC_002512.2 + 88154 0.66 0.829488
Target:  5'- uCCGCccgUGGCCGUCgUGCGGGaa--CCGg -3'
miRNA:   3'- -GGCG---ACUGGCAGgGCGUCCacagGGC- -5'
9027 3' -60.9 NC_002512.2 + 111118 0.66 0.821628
Target:  5'- gCGgaGgcGCCG-CCCGCGGG-GUCCUu -3'
miRNA:   3'- gGCgaC--UGGCaGGGCGUCCaCAGGGc -5'
9027 3' -60.9 NC_002512.2 + 91936 0.66 0.821628
Target:  5'- uCCGCgaGCUGUUCCGCAGGcaggugauccgcUGUCUgGa -3'
miRNA:   3'- -GGCGacUGGCAGGGCGUCC------------ACAGGgC- -5'
9027 3' -60.9 NC_002512.2 + 121240 0.66 0.813619
Target:  5'- aUGUgGACCGcCCCGU-GG-GUCCCGu -3'
miRNA:   3'- gGCGaCUGGCaGGGCGuCCaCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.