miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9027 5' -54.7 NC_002512.2 + 190512 0.66 0.976972
Target:  5'- uGCCGGCACUcccucgacgagcuggUCGGGgcGAggGaCCGGCu -3'
miRNA:   3'- -UGGUCGUGAa--------------AGUCCa-CUagC-GGCCG- -5'
9027 5' -54.7 NC_002512.2 + 139 0.66 0.976732
Target:  5'- cGCCGGgGagc-CGGGcgGggCGCCGGCg -3'
miRNA:   3'- -UGGUCgUgaaaGUCCa-CuaGCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 100977 0.66 0.976732
Target:  5'- gUCAGCucccGCgg-CGGGcgGAUCGCCaGGCc -3'
miRNA:   3'- uGGUCG----UGaaaGUCCa-CUAGCGG-CCG- -5'
9027 5' -54.7 NC_002512.2 + 70090 0.66 0.976732
Target:  5'- cGCCAGUuCgaucgUCAGGUGcagGCCGGg -3'
miRNA:   3'- -UGGUCGuGaa---AGUCCACuagCGGCCg -5'
9027 5' -54.7 NC_002512.2 + 81013 0.66 0.976732
Target:  5'- -gCAGCAgCUUgcgCAGGcgGAggcggcaGCCGGCg -3'
miRNA:   3'- ugGUCGU-GAAa--GUCCa-CUag-----CGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 8160 0.66 0.976732
Target:  5'- cGCCAgGCGC--UCGGG-GAUC-UCGGCg -3'
miRNA:   3'- -UGGU-CGUGaaAGUCCaCUAGcGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 136178 0.66 0.976732
Target:  5'- cGCC-GCGCgg-CGGG--GUCGCCGGg -3'
miRNA:   3'- -UGGuCGUGaaaGUCCacUAGCGGCCg -5'
9027 5' -54.7 NC_002512.2 + 101174 0.66 0.976732
Target:  5'- cACCuuGCGg-UUCAGGaUGGUguuguccgagaCGCCGGCg -3'
miRNA:   3'- -UGGu-CGUgaAAGUCC-ACUA-----------GCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 147505 0.66 0.976732
Target:  5'- gACCGGCGCUUcUCccGUcccgccGAUC-CCGGCg -3'
miRNA:   3'- -UGGUCGUGAA-AGucCA------CUAGcGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 229542 0.66 0.976732
Target:  5'- cGCCGGgGagc-CGGGcgGggCGCCGGCg -3'
miRNA:   3'- -UGGUCgUgaaaGUCCa-CuaGCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 88617 0.66 0.976492
Target:  5'- gGCCGGCG---UCGGGacgaacgUGGUCGUCGcGCu -3'
miRNA:   3'- -UGGUCGUgaaAGUCC-------ACUAGCGGC-CG- -5'
9027 5' -54.7 NC_002512.2 + 115341 0.66 0.976249
Target:  5'- -gCGGCGCgauccagaagaUCGGcGUGAagaCGCCGGCg -3'
miRNA:   3'- ugGUCGUGaa---------AGUC-CACUa--GCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 198149 0.66 0.974241
Target:  5'- aGCCccGCGCgggcCGGGUcGG-CGCCGGCc -3'
miRNA:   3'- -UGGu-CGUGaaa-GUCCA-CUaGCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 165929 0.66 0.974241
Target:  5'- cACC-GCAUgugUCGGGUcuaccagaagGA-CGCCGGCc -3'
miRNA:   3'- -UGGuCGUGaa-AGUCCA----------CUaGCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 94888 0.66 0.974241
Target:  5'- uCCAGgACgaaCGGGUaggcgucccGGUCGCCGGg -3'
miRNA:   3'- uGGUCgUGaaaGUCCA---------CUAGCGGCCg -5'
9027 5' -54.7 NC_002512.2 + 107083 0.66 0.974241
Target:  5'- uCgGGgGCggUCGGGUcGGUCGgCGGCc -3'
miRNA:   3'- uGgUCgUGaaAGUCCA-CUAGCgGCCG- -5'
9027 5' -54.7 NC_002512.2 + 60857 0.66 0.974241
Target:  5'- uGCCGGCGCcgcUCGcGGacgccgcccgGAUCGCCGaGCc -3'
miRNA:   3'- -UGGUCGUGaa-AGU-CCa---------CUAGCGGC-CG- -5'
9027 5' -54.7 NC_002512.2 + 94063 0.66 0.974241
Target:  5'- gACgGGCGCgg-CGGGaacggGAcCGUCGGCg -3'
miRNA:   3'- -UGgUCGUGaaaGUCCa----CUaGCGGCCG- -5'
9027 5' -54.7 NC_002512.2 + 137789 0.66 0.974241
Target:  5'- gUCGGCGCUcggCGGGccGcgCGuCCGGCg -3'
miRNA:   3'- uGGUCGUGAaa-GUCCa-CuaGC-GGCCG- -5'
9027 5' -54.7 NC_002512.2 + 157471 0.66 0.973458
Target:  5'- uACCAGUACUaccgCGuGGUGuUCGCCauccugcagaaccuGGCg -3'
miRNA:   3'- -UGGUCGUGAaa--GU-CCACuAGCGG--------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.