miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
903 5' -53.3 NC_000899.1 + 41459 0.66 0.790825
Target:  5'- gCGCuCGACuucaAUGGAUGCCGC-CGUAUCa -3'
miRNA:   3'- -GUG-GUUG----UACCUGUGGUGcGCGUAGg -5'
903 5' -53.3 NC_000899.1 + 11374 0.66 0.769339
Target:  5'- gCACCAACGaGGcCAUCACGgacaaccUGCGUCg -3'
miRNA:   3'- -GUGGUUGUaCCuGUGGUGC-------GCGUAGg -5'
903 5' -53.3 NC_000899.1 + 16344 0.66 0.759923
Target:  5'- aACCAAaguCGUGGugACCAa--GCAUCg -3'
miRNA:   3'- gUGGUU---GUACCugUGGUgcgCGUAGg -5'
903 5' -53.3 NC_000899.1 + 30225 0.66 0.749331
Target:  5'- uCGCCAaaACGcaGACuucuGCCACGCGCG-CCg -3'
miRNA:   3'- -GUGGU--UGUacCUG----UGGUGCGCGUaGG- -5'
903 5' -53.3 NC_000899.1 + 14024 0.67 0.72778
Target:  5'- gGCgAGCAUGGuauuGC-CCGCGUGCugugCCa -3'
miRNA:   3'- gUGgUUGUACC----UGuGGUGCGCGua--GG- -5'
903 5' -53.3 NC_000899.1 + 13344 0.67 0.72451
Target:  5'- gCACCGACAgcagcuuccgcaagcGGCGCCgACGCgaaaccGCGUCCg -3'
miRNA:   3'- -GUGGUUGUac-------------CUGUGG-UGCG------CGUAGG- -5'
903 5' -53.3 NC_000899.1 + 10180 0.67 0.705826
Target:  5'- cCACCGAacuCGUGGA-ACgGCGCGaCGUCUu -3'
miRNA:   3'- -GUGGUU---GUACCUgUGgUGCGC-GUAGG- -5'
903 5' -53.3 NC_000899.1 + 13487 0.68 0.649823
Target:  5'- aGCgGACGaGGGCAgCGCGUGCugcgCCg -3'
miRNA:   3'- gUGgUUGUaCCUGUgGUGCGCGua--GG- -5'
903 5' -53.3 NC_000899.1 + 12971 0.68 0.649823
Target:  5'- cUACCAguACAU--GCACCGCGCGC-UCa -3'
miRNA:   3'- -GUGGU--UGUAccUGUGGUGCGCGuAGg -5'
903 5' -53.3 NC_000899.1 + 41412 0.69 0.559841
Target:  5'- gCGCCAcCAUGGAgucaACUAC-CGUAUCCu -3'
miRNA:   3'- -GUGGUuGUACCUg---UGGUGcGCGUAGG- -5'
903 5' -53.3 NC_000899.1 + 39003 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 40486 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 38868 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 40351 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39137 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39272 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39407 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39542 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39677 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5'
903 5' -53.3 NC_000899.1 + 39812 0.73 0.36726
Target:  5'- gGCCGGCAggGGGCGCC-CGUGCugggcgCCg -3'
miRNA:   3'- gUGGUUGUa-CCUGUGGuGCGCGua----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.