miRNA display CGI

Results 41 - 50 of 50 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9030	5'	-52.5	NC_002512.2	+	27519	0.7	0.949975
	Target:  5'- --uAUUUCGAcgacccgCCGCCGC-CCGGAc -3' miRNA:   3'- gcuUAAAGCUua-----GGCGGCGaGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	25193	0.69	0.957821
	Target:  5'- cCGAcg-UCGcGUCCGCCGCgaCGGAg -3' miRNA:   3'- -GCUuaaAGCuUAGGCGGCGagGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	20824	0.67	0.990585
	Target:  5'- aCGAAgacgucgUCGGAggagCCGUcggaauCGCUCCGGGa -3' miRNA:   3'- -GCUUaa-----AGCUUa---GGCG------GCGAGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	18420	0.68	0.977174
	Target:  5'- uCGAGgugUCGGAUCCggggcagccgcaggcGCCcgaGCUCCGGGc -3' miRNA:   3'- -GCUUaa-AGCUUAGG---------------CGG---CGAGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	16998	0.69	0.96794
	Target:  5'- cCGAc--UCGGuccauggCCGCCGuCUCCGGAg -3' miRNA:   3'- -GCUuaaAGCUua-----GGCGGC-GAGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	12304	0.68	0.982787
	Target:  5'- cCGAGg--CGGcgCCGCCGgaCCGGc- -3' miRNA:   3'- -GCUUaaaGCUuaGGCGGCgaGGCCua -5'
9030	5'	-52.5	NC_002512.2	+	10450	0.67	0.990585
	Target:  5'- aCGGGggcgCGGAggaggccgCCGCCGCcCCGGGc -3' miRNA:   3'- -GCUUaaa-GCUUa-------GGCGGCGaGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	8821	0.7	0.936481
	Target:  5'- uCGGucgUUCGAAUCagGCCagaauGCUCCGGAa -3' miRNA:   3'- -GCUua-AAGCUUAGg-CGG-----CGAGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	3119	0.68	0.980128
	Target:  5'- uGAAUUcacUCGAauGaccggccgcacgccUCCGCCGuCUCCGGGa -3' miRNA:   3'- gCUUAA---AGCU--U--------------AGGCGGC-GAGGCCUa -5'
9030	5'	-52.5	NC_002512.2	+	2213	0.66	0.99455
	Target:  5'- uCGGucgccggCGGcgCCGCCGCucuuccUCCGGAc -3' miRNA:   3'- -GCUuaaa---GCUuaGGCGGCG------AGGCCUa -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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