miRNA display CGI


Results 101 - 117 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 96276 0.66 0.940291
Target:  5'- cACCGGcaggcggGGGGgCUGCCGc--GGGCCg -3'
miRNA:   3'- aUGGCCa------UCCUgGAUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 169503 0.66 0.960203
Target:  5'- aUAUgGGUGGGGCggGCgUGGgaGGGACCu -3'
miRNA:   3'- -AUGgCCAUCCUGgaUG-GCCa-UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 57055 0.66 0.960203
Target:  5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3'
miRNA:   3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5'
9031 3' -56.3 NC_002512.2 + 76939 0.66 0.944707
Target:  5'- gACCGG--GGACCgcucccgcugACCGaccgGGGACCg -3'
miRNA:   3'- aUGGCCauCCUGGa---------UGGCca--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149500 0.66 0.940291
Target:  5'- gGCgGGUGGucaaaaGGCCgcgGCCGGagcGGGCCg -3'
miRNA:   3'- aUGgCCAUC------CUGGa--UGGCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 123804 0.66 0.940291
Target:  5'- gGCUGaagAGcGGCCUGUCGGUGGcGACCa -3'
miRNA:   3'- aUGGCca-UC-CUGGAUGGCCAUC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 115869 0.66 0.942084
Target:  5'- cGCCGaGgcGGGCCcGCCGGacgacgacaaccggaUccGGGACCu -3'
miRNA:   3'- aUGGC-CauCCUGGaUGGCC---------------A--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 220776 0.66 0.952883
Target:  5'- -gUCGGguccauGGACCUGCUGG--GGAUCg -3'
miRNA:   3'- auGGCCau----CCUGGAUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 158287 0.66 0.952883
Target:  5'- aGCUGG-AGGGCgUGCCGGcccccaAGG-CCg -3'
miRNA:   3'- aUGGCCaUCCUGgAUGGCCa-----UCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 97071 0.66 0.956648
Target:  5'- gUGCUGGgugcGGAUCUucuuCCGGaAGGACg -3'
miRNA:   3'- -AUGGCCau--CCUGGAu---GGCCaUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 186824 0.66 0.956648
Target:  5'- gACCGGUgccucggcgAGGcCCUGCgCGucgccgAGGACCu -3'
miRNA:   3'- aUGGCCA---------UCCuGGAUG-GCca----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 189666 0.66 0.956648
Target:  5'- cACCGGcgucGGcCCUACUGGUaccGGcGGCCc -3'
miRNA:   3'- aUGGCCau--CCuGGAUGGCCA---UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 92641 0.66 0.956648
Target:  5'- cGCCGGcgccGGGACCcGCgCGGauccGGGACg -3'
miRNA:   3'- aUGGCCa---UCCUGGaUG-GCCa---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 114031 0.66 0.960203
Target:  5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3'
miRNA:   3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95714 0.66 0.961567
Target:  5'- gGCCGGgagGGGAagacggcuccccgucCCcGCCGGccGGGACg -3'
miRNA:   3'- aUGGCCa--UCCU---------------GGaUGGCCa-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 61453 0.66 0.960203
Target:  5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3'
miRNA:   3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5'
9031 3' -56.3 NC_002512.2 + 6333 0.66 0.940291
Target:  5'- cGCgGG-GGGACCgggcgcgggGCCGGc-GGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGa--------UGGCCauCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.