miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 136066 0.69 0.862847
Target:  5'- uUAUUGcGUGGGuCCgGCCGG-GGGGCCg -3'
miRNA:   3'- -AUGGC-CAUCCuGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 135217 0.71 0.780877
Target:  5'- gGCCGG-GGGGCCccCCGGccccGGGCCg -3'
miRNA:   3'- aUGGCCaUCCUGGauGGCCau--CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 134754 0.68 0.877109
Target:  5'- cGCCGGggcGGACCguCCGGUucgucggcGGGCCc -3'
miRNA:   3'- aUGGCCau-CCUGGauGGCCAu-------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 134522 0.68 0.895061
Target:  5'- cGCCGGUuacgacGGGACCUAUCcccucuucgacuuccUGGGGCCg -3'
miRNA:   3'- aUGGCCA------UCCUGGAUGGcc-------------AUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 132106 0.79 0.333929
Target:  5'- gACCGGggcucgAGGGCCgcCCGGUAGG-CCg -3'
miRNA:   3'- aUGGCCa-----UCCUGGauGGCCAUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 132012 0.7 0.823069
Target:  5'- cGCCGGgGGGACCUcggcggcgacgucGUCGGccaGGGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGA-------------UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 130679 0.69 0.832036
Target:  5'- gACCGGgacGGGCUgcuCgUGGUGGGGCCc -3'
miRNA:   3'- aUGGCCau-CCUGGau-G-GCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 128189 0.72 0.706009
Target:  5'- cGCCGagcGGGCC-GCCGGcGGGACCg -3'
miRNA:   3'- aUGGCcauCCUGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 127647 0.68 0.89696
Target:  5'- gAUCGGgucgcucGGACg-GCCGGUcgAGGGCCg -3'
miRNA:   3'- aUGGCCau-----CCUGgaUGGCCA--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 123804 0.66 0.940291
Target:  5'- gGCUGaagAGcGGCCUGUCGGUGGcGACCa -3'
miRNA:   3'- aUGGCca-UC-CUGGAUGGCCAUC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 123728 0.7 0.798513
Target:  5'- gACCuGUGcucGGACCUGCgGGgucGGACCu -3'
miRNA:   3'- aUGGcCAU---CCUGGAUGgCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 122236 0.66 0.959857
Target:  5'- gACCGGUcuGACCUACagcuCGGUcuuccccGGcGGCCg -3'
miRNA:   3'- aUGGCCAucCUGGAUG----GCCA-------UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 120242 0.71 0.771869
Target:  5'- gGCCuGUcguggAGGGCCUACCcGcGGGACCg -3'
miRNA:   3'- aUGGcCA-----UCCUGGAUGGcCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 119562 0.7 0.815586
Target:  5'- gACCGGgcGGACCgcgggagcCCGGcGGGuCCc -3'
miRNA:   3'- aUGGCCauCCUGGau------GGCCaUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 119326 0.67 0.925711
Target:  5'- -cCCGGcAGGACCUcCCGcGcgGGGGCg -3'
miRNA:   3'- auGGCCaUCCUGGAuGGC-Ca-UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 115872 0.68 0.877109
Target:  5'- -cCCGGUgccgcugcGGGGCCgacGgCGGcGGGACCa -3'
miRNA:   3'- auGGCCA--------UCCUGGa--UgGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 115869 0.66 0.942084
Target:  5'- cGCCGaGgcGGGCCcGCCGGacgacgacaaccggaUccGGGACCu -3'
miRNA:   3'- aUGGC-CauCCUGGaUGGCC---------------A--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 115734 0.66 0.948904
Target:  5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3'
miRNA:   3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 114132 0.71 0.762743
Target:  5'- cACCGGUccgAGGAgCaGCCGGcagAGGACg -3'
miRNA:   3'- aUGGCCA---UCCUgGaUGGCCa--UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 114031 0.66 0.960203
Target:  5'- cACCGGgcgcgguGGACgUAgaGGgcGGGCCc -3'
miRNA:   3'- aUGGCCau-----CCUGgAUggCCauCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.