Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 43646 | 0.68 | 0.89696 |
Target: 5'- gACCGaGgaccGGGACCUcGCCcucGGUGGcGGCCg -3' miRNA: 3'- aUGGC-Ca---UCCUGGA-UGG---CCAUC-CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 68515 | 0.68 | 0.909123 |
Target: 5'- aAgCGGUA-GACCUGCUGGcccAGGugCg -3' miRNA: 3'- aUgGCCAUcCUGGAUGGCCa--UCCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 99656 | 0.66 | 0.952883 |
Target: 5'- cGCCGGggcccagAGGuucCCcGCCGccgAGGACCa -3' miRNA: 3'- aUGGCCa------UCCu--GGaUGGCca-UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 41539 | 0.67 | 0.91431 |
Target: 5'- gGCCuGGUAgagguugcGGGCCUGCaCGGUGGcgcgcagguucuuGACCu -3' miRNA: 3'- aUGG-CCAU--------CCUGGAUG-GCCAUC-------------CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 128189 | 0.72 | 0.706009 |
Target: 5'- cGCCGagcGGGCC-GCCGGcGGGACCg -3' miRNA: 3'- aUGGCcauCCUGGaUGGCCaUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 61453 | 0.66 | 0.960203 |
Target: 5'- cUGCUGGUggcccGGGACCUguACCGGgugAGcAUCg -3' miRNA: 3'- -AUGGCCA-----UCCUGGA--UGGCCa--UCcUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 102868 | 0.69 | 0.832036 |
Target: 5'- gACCGGgGGGacGCCUACgGG--GGACCc -3' miRNA: 3'- aUGGCCaUCC--UGGAUGgCCauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 130679 | 0.69 | 0.832036 |
Target: 5'- gACCGGgacGGGCUgcuCgUGGUGGGGCCc -3' miRNA: 3'- aUGGCCau-CCUGGau-G-GCCAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 76864 | 0.66 | 0.949311 |
Target: 5'- gACCGG--GGACCgcucccgccgacccgACCGG--GGACCg -3' miRNA: 3'- aUGGCCauCCUGGa--------------UGGCCauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 4209 | 0.66 | 0.956648 |
Target: 5'- gAUCGGUGGGAgCgGCCGcgGGGAgCg -3' miRNA: 3'- aUGGCCAUCCUgGaUGGCcaUCCUgG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 45294 | 0.66 | 0.959509 |
Target: 5'- cGCgGGUcGGAcggaccgccgcCCUGCCGGcccgcgggucggAGGGCCg -3' miRNA: 3'- aUGgCCAuCCU-----------GGAUGGCCa-----------UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 122236 | 0.66 | 0.959857 |
Target: 5'- gACCGGUcuGACCUACagcuCGGUcuuccccGGcGGCCg -3' miRNA: 3'- aUGGCCAucCUGGAUG----GCCA-------UC-CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 57055 | 0.66 | 0.960203 |
Target: 5'- gACCGGgGGGcGCCgggcgaaCGGUAGGcgcACCg -3' miRNA: 3'- aUGGCCaUCC-UGGaug----GCCAUCC---UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 69117 | 0.66 | 0.948904 |
Target: 5'- cGCCGGccccgcuccGGGACCU-CCGuGcccGGGGCCg -3' miRNA: 3'- aUGGCCa--------UCCUGGAuGGC-Ca--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 169503 | 0.66 | 0.960203 |
Target: 5'- aUAUgGGUGGGGCggGCgUGGgaGGGACCu -3' miRNA: 3'- -AUGgCCAUCCUGgaUG-GCCa-UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 29154 | 0.66 | 0.948904 |
Target: 5'- -cCCGGUAcgacccguucGGACC-GCCGGgcGGcaGCCc -3' miRNA: 3'- auGGCCAU----------CCUGGaUGGCCauCC--UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 115734 | 0.66 | 0.948904 |
Target: 5'- gACCGGgcccGGGucguCCUcuGCCGGcugcuccuGGACCg -3' miRNA: 3'- aUGGCCa---UCCu---GGA--UGGCCau------CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 38922 | 0.66 | 0.952883 |
Target: 5'- -cCCGGaGGGGCC-GCCGcGgcGGGCg -3' miRNA: 3'- auGGCCaUCCUGGaUGGC-CauCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 70169 | 0.68 | 0.909123 |
Target: 5'- cGCCGGUAGuACCUcucCCGGUcccGGugCc -3' miRNA: 3'- aUGGCCAUCcUGGAu--GGCCAu--CCugG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 40220 | 0.69 | 0.853157 |
Target: 5'- gUACCaGUAGGGCCgacGCCGGUGucGGcgcgucccgacgaaGCCg -3' miRNA: 3'- -AUGGcCAUCCUGGa--UGGCCAU--CC--------------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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