miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 169273 0.69 0.854668
Target:  5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 169377 0.69 0.855421
Target:  5'- aGCCaagugGGaGGGGCCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-----CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 136066 0.69 0.862847
Target:  5'- uUAUUGcGUGGGuCCgGCCGG-GGGGCCg -3'
miRNA:   3'- -AUGGC-CAUCCuGGaUGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 69936 0.69 0.862847
Target:  5'- -cCCGGUAGG-UCU-CCGGUccGGCCa -3'
miRNA:   3'- auGGCCAUCCuGGAuGGCCAucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 95243 0.69 0.870078
Target:  5'- -uCCGGagGGGGCgU-CCGG-AGGGCCg -3'
miRNA:   3'- auGGCCa-UCCUGgAuGGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 4629 0.69 0.870078
Target:  5'- -gUCGGUGGuGACCUGgaCGGUggugGGGAUCg -3'
miRNA:   3'- auGGCCAUC-CUGGAUg-GCCA----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 198160 0.69 0.862847
Target:  5'- gGCCGGgucGGcGCCgGCCGGc-GGACCu -3'
miRNA:   3'- aUGGCCau-CC-UGGaUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 143684 0.69 0.855421
Target:  5'- aGCCGGgcgGGGugUcggGCaCGG-AGGGCCg -3'
miRNA:   3'- aUGGCCa--UCCugGa--UG-GCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 107077 0.69 0.84001
Target:  5'- cGCUGGacguagGGGACCcGCCGccAGGGCCc -3'
miRNA:   3'- aUGGCCa-----UCCUGGaUGGCcaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149005 0.69 0.832036
Target:  5'- gGCCGG-GGGGCC-GCCGc--GGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGaUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 115872 0.68 0.877109
Target:  5'- -cCCGGUgccgcugcGGGGCCgacGgCGGcGGGACCa -3'
miRNA:   3'- auGGCCA--------UCCUGGa--UgGCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 134754 0.68 0.877109
Target:  5'- cGCCGGggcGGACCguCCGGUucgucggcGGGCCc -3'
miRNA:   3'- aUGGCCau-CCUGGauGGCCAu-------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 134522 0.68 0.895061
Target:  5'- cGCCGGUuacgacGGGACCUAUCcccucuucgacuuccUGGGGCCg -3'
miRNA:   3'- aUGGCCA------UCCUGGAUGGcc-------------AUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 43646 0.68 0.89696
Target:  5'- gACCGaGgaccGGGACCUcGCCcucGGUGGcGGCCg -3'
miRNA:   3'- aUGGC-Ca---UCCUGGA-UGG---CCAUC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 75726 0.68 0.89696
Target:  5'- aACCacagGGUAccGCCUACCGGaAGGACa -3'
miRNA:   3'- aUGG----CCAUccUGGAUGGCCaUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 98536 0.68 0.903151
Target:  5'- cGCCGGcUGGGACCUcgcCCGGcguuccgcGGAUCc -3'
miRNA:   3'- aUGGCC-AUCCUGGAu--GGCCau------CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 68515 0.68 0.909123
Target:  5'- aAgCGGUA-GACCUGCUGGcccAGGugCg -3'
miRNA:   3'- aUgGCCAUcCUGGAUGGCCa--UCCugG- -5'
9031 3' -56.3 NC_002512.2 + 70169 0.68 0.909123
Target:  5'- cGCCGGUAGuACCUcucCCGGUcccGGugCc -3'
miRNA:   3'- aUGGCCAUCcUGGAu--GGCCAu--CCugG- -5'
9031 3' -56.3 NC_002512.2 + 221855 0.68 0.903151
Target:  5'- -cUCGGgaccGGGACCUcucggaGCgGGUGGGGCg -3'
miRNA:   3'- auGGCCa---UCCUGGA------UGgCCAUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 112587 0.68 0.89696
Target:  5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3'
miRNA:   3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.