miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 166462 0.67 0.914875
Target:  5'- cGCCGGgcucgAGGGCggggaCGGcGGGACCg -3'
miRNA:   3'- aUGGCCa----UCCUGgaug-GCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 221855 0.68 0.903151
Target:  5'- -cUCGGgaccGGGACCUcucggaGCgGGUGGGGCg -3'
miRNA:   3'- auGGCCa---UCCUGGA------UGgCCAUCCUGg -5'
9031 3' -56.3 NC_002512.2 + 112587 0.68 0.89696
Target:  5'- --aCGGUgAGGGCgUAgaggaacucCUGGUAGGACCc -3'
miRNA:   3'- augGCCA-UCCUGgAU---------GGCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 127647 0.68 0.89696
Target:  5'- gAUCGGgucgcucGGACg-GCCGGUcgAGGGCCg -3'
miRNA:   3'- aUGGCCau-----CCUGgaUGGCCA--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 226213 0.68 0.884607
Target:  5'- gACgGG-AGGACCU-CCGGaccgucggccgcgagGGGGCCg -3'
miRNA:   3'- aUGgCCaUCCUGGAuGGCCa--------------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 222982 0.68 0.883936
Target:  5'- cGCCGGUcuuccucGACCUGCCGGggAGcGGCa -3'
miRNA:   3'- aUGGCCAuc-----CUGGAUGGCCa-UC-CUGg -5'
9031 3' -56.3 NC_002512.2 + 195369 0.68 0.877109
Target:  5'- gUGCUGGUcGGcugccuggucACCUGCCGGgucGACCg -3'
miRNA:   3'- -AUGGCCAuCC----------UGGAUGGCCaucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 185505 0.68 0.877109
Target:  5'- cGCCGGgcugcgcgGGGGCCUGCCgcucuucgagggGGUGGccuACCg -3'
miRNA:   3'- aUGGCCa-------UCCUGGAUGG------------CCAUCc--UGG- -5'
9031 3' -56.3 NC_002512.2 + 4629 0.69 0.870078
Target:  5'- -gUCGGUGGuGACCUGgaCGGUggugGGGAUCg -3'
miRNA:   3'- auGGCCAUC-CUGGAUg-GCCA----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 198160 0.69 0.862847
Target:  5'- gGCCGGgucGGcGCCgGCCGGc-GGACCu -3'
miRNA:   3'- aUGGCCau-CC-UGGaUGGCCauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 143684 0.69 0.855421
Target:  5'- aGCCGGgcgGGGugUcggGCaCGG-AGGGCCg -3'
miRNA:   3'- aUGGCCa--UCCugGa--UG-GCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 107077 0.69 0.84001
Target:  5'- cGCUGGacguagGGGACCcGCCGccAGGGCCc -3'
miRNA:   3'- aUGGCCa-----UCCUGGaUGGCcaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149005 0.69 0.832036
Target:  5'- gGCCGG-GGGGCC-GCCGc--GGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGaUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 167737 0.7 0.823893
Target:  5'- aGCgGGgcgAGGAgCUGCCGGgcgucGGcGACCg -3'
miRNA:   3'- aUGgCCa--UCCUgGAUGGCCa----UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 132012 0.7 0.823069
Target:  5'- cGCCGGgGGGACCUcggcggcgacgucGUCGGccaGGGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGA-------------UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149127 0.7 0.815586
Target:  5'- aGCCGcG-AGGACCc-CCGGgacccGGGACCg -3'
miRNA:   3'- aUGGC-CaUCCUGGauGGCCa----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 119562 0.7 0.815586
Target:  5'- gACCGGgcGGACCgcgggagcCCGGcGGGuCCc -3'
miRNA:   3'- aUGGCCauCCUGGau------GGCCaUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 201849 0.7 0.807124
Target:  5'- gGCCGGcagcucgccUGGGGCCUG-CGGUccgAGGACg -3'
miRNA:   3'- aUGGCC---------AUCCUGGAUgGCCA---UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 108509 0.7 0.789762
Target:  5'- gGCCGGgcccGGcGCCcgACCGGccgGGGACCc -3'
miRNA:   3'- aUGGCCau--CC-UGGa-UGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 157362 0.71 0.780877
Target:  5'- cGCCGaGguccGGGCC-GCCGGgcaGGGACCg -3'
miRNA:   3'- aUGGC-Cau--CCUGGaUGGCCa--UCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.