Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 20498 | 0.66 | 0.751662 |
Target: 5'- -gCAGGAGCUggccgaggucgaaguCGGGACacaCgGUCGCCa -3' miRNA: 3'- caGUCCUCGG---------------GCUCUGg--GgCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118175 | 0.66 | 0.757035 |
Target: 5'- ------cGCCgGAGACUCCGUCGUCa -3' miRNA: 3'- caguccuCGGgCUCUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 123196 | 0.66 | 0.748062 |
Target: 5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3' miRNA: 3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126971 | 0.66 | 0.748062 |
Target: 5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3' miRNA: 3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 5532 | 0.67 | 0.692628 |
Target: 5'- --gAGGucucccGCCCGcGACCCCGgcgcggCGCCg -3' miRNA: 3'- cagUCCu-----CGGGCuCUGGGGCa-----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 64623 | 0.67 | 0.692628 |
Target: 5'- --aAGGGGUCCGGGGCUCCGcgacgCGUCc -3' miRNA: 3'- cagUCCUCGGGCUCUGGGGCa----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 93202 | 0.67 | 0.692628 |
Target: 5'- cGUCAgGGAGUCCGucuccauGACCUCG-CGCUc -3' miRNA: 3'- -CAGU-CCUCGGGCu------CUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 130482 | 0.67 | 0.70202 |
Target: 5'- gGUCGGG-GCCCGA---UCCGUCGCa- -3' miRNA: 3'- -CAGUCCuCGGGCUcugGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 25945 | 0.67 | 0.70202 |
Target: 5'- -cCGGGGGCCaCGAgGGCCUCGUaguagcggaGCCa -3' miRNA: 3'- caGUCCUCGG-GCU-CUGGGGCAg--------CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 82909 | 0.67 | 0.692628 |
Target: 5'- gGUCAGGcAGCggaagucucggCCGcGGCCgCCGUCGUCg -3' miRNA: 3'- -CAGUCC-UCG-----------GGCuCUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 122867 | 0.67 | 0.683192 |
Target: 5'- cGUCGGGAgcgcGCCCGGcucucggccGACCCCGgcccgggCGUCc -3' miRNA: 3'- -CAGUCCU----CGGGCU---------CUGGGGCa------GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 142297 | 0.67 | 0.664218 |
Target: 5'- -aCGGGGGaUCCGAcGCgUCCGUCGCCg -3' miRNA: 3'- caGUCCUC-GGGCUcUG-GGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 49451 | 0.67 | 0.664218 |
Target: 5'- -aCGGGcgccGCCCGGGGCgCCGUCaCCg -3' miRNA: 3'- caGUCCu---CGGGCUCUGgGGCAGcGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91475 | 0.67 | 0.672771 |
Target: 5'- gGUCAGGuacuugguGGCCCGcggcucgaagcgcAGGCUCCGUUGCg- -3' miRNA: 3'- -CAGUCC--------UCGGGC-------------UCUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 14730 | 0.67 | 0.67372 |
Target: 5'- -gCAGGAcgGCCa-GGugCUCGUCGCCUc -3' miRNA: 3'- caGUCCU--CGGgcUCugGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126929 | 0.67 | 0.67372 |
Target: 5'- -cCGGGA-CCaCGAguucuccgcgGACUCCGUCGCCUg -3' miRNA: 3'- caGUCCUcGG-GCU----------CUGGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91978 | 0.67 | 0.682246 |
Target: 5'- cGUCcGGAgggccgcGUCCGGGucuCCCgCGUCGCCg -3' miRNA: 3'- -CAGuCCU-------CGGGCUCu--GGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 103209 | 0.67 | 0.683192 |
Target: 5'- -gCGGGGGUauCCGAGgcgGCUCgCGUCGCCg -3' miRNA: 3'- caGUCCUCG--GGCUC---UGGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 105515 | 0.67 | 0.683192 |
Target: 5'- --gGGGGGCuCUGgcuGGACCCCGgCGCCc -3' miRNA: 3'- cagUCCUCG-GGC---UCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 3407 | 0.67 | 0.683192 |
Target: 5'- --gGGGAGCgCCcGGGCCCCGgccuccuccCGCCUc -3' miRNA: 3'- cagUCCUCG-GGcUCUGGGGCa--------GCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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