Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 128852 | 0.67 | 0.654693 |
Target: 5'- cUCGGGcGCCgCGcGGGCCCUGgugcugCGCCUg -3' miRNA: 3'- cAGUCCuCGG-GC-UCUGGGGCa-----GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 82909 | 0.67 | 0.692628 |
Target: 5'- gGUCAGGcAGCggaagucucggCCGcGGCCgCCGUCGUCg -3' miRNA: 3'- -CAGUCC-UCG-----------GGCuCUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 213008 | 0.67 | 0.664218 |
Target: 5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3' miRNA: 3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 49451 | 0.67 | 0.664218 |
Target: 5'- -aCGGGcgccGCCCGGGGCgCCGUCaCCg -3' miRNA: 3'- caGUCCu---CGGGCUCUGgGGCAGcGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91475 | 0.67 | 0.672771 |
Target: 5'- gGUCAGGuacuugguGGCCCGcggcucgaagcgcAGGCUCCGUUGCg- -3' miRNA: 3'- -CAGUCC--------UCGGGC-------------UCUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 14730 | 0.67 | 0.67372 |
Target: 5'- -gCAGGAcgGCCa-GGugCUCGUCGCCUc -3' miRNA: 3'- caGUCCU--CGGgcUCugGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 122867 | 0.67 | 0.683192 |
Target: 5'- cGUCGGGAgcgcGCCCGGcucucggccGACCCCGgcccgggCGUCc -3' miRNA: 3'- -CAGUCCU----CGGGCU---------CUGGGGCa------GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 5532 | 0.67 | 0.692628 |
Target: 5'- --gAGGucucccGCCCGcGACCCCGgcgcggCGCCg -3' miRNA: 3'- cagUCCu-----CGGGCuCUGGGGCa-----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 105515 | 0.67 | 0.683192 |
Target: 5'- --gGGGGGCuCUGgcuGGACCCCGgCGCCc -3' miRNA: 3'- cagUCCUCG-GGC---UCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 103209 | 0.67 | 0.683192 |
Target: 5'- -gCGGGGGUauCCGAGgcgGCUCgCGUCGCCg -3' miRNA: 3'- caGUCCUCG--GGCUC---UGGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 3407 | 0.67 | 0.683192 |
Target: 5'- --gGGGAGCgCCcGGGCCCCGgccuccuccCGCCUc -3' miRNA: 3'- cagUCCUCG-GGcUCUGGGGCa--------GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91978 | 0.67 | 0.682246 |
Target: 5'- cGUCcGGAgggccgcGUCCGGGucuCCCgCGUCGCCg -3' miRNA: 3'- -CAGuCCU-------CGGGCUCu--GGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126929 | 0.67 | 0.67372 |
Target: 5'- -cCGGGA-CCaCGAguucuccgcgGACUCCGUCGCCUg -3' miRNA: 3'- caGUCCUcGG-GCU----------CUGGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 110841 | 0.68 | 0.597445 |
Target: 5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3' miRNA: 3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 107192 | 0.68 | 0.606013 |
Target: 5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3' miRNA: 3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118798 | 0.68 | 0.616503 |
Target: 5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3' miRNA: 3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 115107 | 0.68 | 0.616503 |
Target: 5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3' miRNA: 3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111771 | 0.68 | 0.635603 |
Target: 5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3' miRNA: 3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127570 | 0.68 | 0.635603 |
Target: 5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3' miRNA: 3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 44084 | 0.68 | 0.645153 |
Target: 5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3' miRNA: 3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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