Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 2166 | 0.69 | 0.569038 |
Target: 5'- gGUCgAGGAGUCgGGGAccguaccgcgcCCCCGcCGCCg -3' miRNA: 3'- -CAG-UCCUCGGgCUCU-----------GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 35919 | 0.69 | 0.531724 |
Target: 5'- gGUCAGGAGCcgCCGGcGGCCUCucgCGCCa -3' miRNA: 3'- -CAGUCCUCG--GGCU-CUGGGGca-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 222217 | 0.69 | 0.57753 |
Target: 5'- cGUCGGGguGGCCguCGGGGCCgcguccuUCGUCGCCg -3' miRNA: 3'- -CAGUCC--UCGG--GCUCUGG-------GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 171735 | 0.69 | 0.569038 |
Target: 5'- aUCGGGAcgucgaGCUCGGGGCCCuCGcccucUCGCCUc -3' miRNA: 3'- cAGUCCU------CGGGCUCUGGG-GC-----AGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 100303 | 0.69 | 0.550284 |
Target: 5'- cGUCGGGGGCgaCGGGGCcgacguCCCGgCGCCUc -3' miRNA: 3'- -CAGUCCUCGg-GCUCUG------GGGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 6511 | 0.69 | 0.569038 |
Target: 5'- cUCAGGAGCCCGugauAGACgCCGgaUCGgCg -3' miRNA: 3'- cAGUCCUCGGGC----UCUGgGGC--AGCgGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 18928 | 0.69 | 0.531724 |
Target: 5'- -aCAGG-GCCCGGacGACCUCGUUgGCCUc -3' miRNA: 3'- caGUCCuCGGGCU--CUGGGGCAG-CGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 224019 | 0.69 | 0.587946 |
Target: 5'- aGUCGGacGAcGCCCGGGACUCCGacggggcCGCCg -3' miRNA: 3'- -CAGUC--CU-CGGGCUCUGGGGCa------GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 96547 | 0.69 | 0.531724 |
Target: 5'- ---cGGGGCCgGGGAUCCCGgaCGCCa -3' miRNA: 3'- caguCCUCGGgCUCUGGGGCa-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 227363 | 0.69 | 0.531724 |
Target: 5'- --gAGGAgGCCCGGGGCCgCCGgCGUCg -3' miRNA: 3'- cagUCCU-CGGGCUCUGG-GGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 107954 | 0.69 | 0.550284 |
Target: 5'- -cCGcGGGUCCGGGACCgCCGcCGCCUc -3' miRNA: 3'- caGUcCUCGGGCUCUGG-GGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 108440 | 0.69 | 0.569038 |
Target: 5'- -cCGGGGGCCgGGGGgucccuCCCCGggcggCGCCg -3' miRNA: 3'- caGUCCUCGGgCUCU------GGGGCa----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 129567 | 0.69 | 0.540977 |
Target: 5'- aGUCccgAGGcGCCgGGacgucGGCCCCGUCGCCc -3' miRNA: 3'- -CAG---UCCuCGGgCU-----CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 121439 | 0.69 | 0.569038 |
Target: 5'- aGUCGgccccGGAGCCCuGAGggguccGCCCCG-CGCCc -3' miRNA: 3'- -CAGU-----CCUCGGG-CUC------UGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 3139 | 0.7 | 0.521613 |
Target: 5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3' miRNA: 3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 99659 | 0.7 | 0.504328 |
Target: 5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3' miRNA: 3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 130291 | 0.7 | 0.477561 |
Target: 5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3' miRNA: 3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 101184 | 0.7 | 0.485519 |
Target: 5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3' miRNA: 3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 216185 | 0.7 | 0.522529 |
Target: 5'- cUCGGGAucgcGCCCGuGAUCaccgccgcggCCGUCGCCUc -3' miRNA: 3'- cAGUCCU----CGGGCuCUGG----------GGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 29707 | 0.7 | 0.477561 |
Target: 5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3' miRNA: 3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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