Results 121 - 140 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 99659 | 0.7 | 0.504328 |
Target: 5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3' miRNA: 3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 3139 | 0.7 | 0.521613 |
Target: 5'- cGUCGuccggccGGAGCCCGGucCCgCCGUCGUCg -3' miRNA: 3'- -CAGU-------CCUCGGGCUcuGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 101184 | 0.7 | 0.485519 |
Target: 5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3' miRNA: 3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 130291 | 0.7 | 0.477561 |
Target: 5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3' miRNA: 3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 29707 | 0.7 | 0.477561 |
Target: 5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3' miRNA: 3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 42192 | 0.71 | 0.434588 |
Target: 5'- gGUCGGGGGUUCGGGuuCCCGgUGCCUc -3' miRNA: 3'- -CAGUCCUCGGGCUCugGGGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 221714 | 0.71 | 0.468794 |
Target: 5'- cUCGGGuGCuacgCCGAGAuCCCCGagCGCCUg -3' miRNA: 3'- cAGUCCuCG----GGCUCU-GGGGCa-GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 215083 | 0.71 | 0.434588 |
Target: 5'- cGUCGGcGGGaCCGAgGACUUCGUCGCCg -3' miRNA: 3'- -CAGUC-CUCgGGCU-CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 37735 | 0.71 | 0.460111 |
Target: 5'- -gCAGGGGCCgCGGGAUcuggCCCG-CGCCg -3' miRNA: 3'- caGUCCUCGG-GCUCUG----GGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 119575 | 0.71 | 0.460111 |
Target: 5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3' miRNA: 3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 68144 | 0.71 | 0.43208 |
Target: 5'- -gCAGGAGCggcgccucCCGAuuguaggucaagacGAUCCCGUCGCCg -3' miRNA: 3'- caGUCCUCG--------GGCU--------------CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 135221 | 0.71 | 0.460111 |
Target: 5'- --gGGGGGCCCcccGGCCCCGggcCGCCUc -3' miRNA: 3'- cagUCCUCGGGcu-CUGGGGCa--GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127935 | 0.71 | 0.426263 |
Target: 5'- -gUAGGGuaCCCGAGGCCCCGuUCGCUc -3' miRNA: 3'- caGUCCUc-GGGCUCUGGGGC-AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 22541 | 0.72 | 0.401872 |
Target: 5'- uGUCGaucGGGGCCgGGGACuaCUCGUCGCCg -3' miRNA: 3'- -CAGU---CCUCGGgCUCUG--GGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 227964 | 0.72 | 0.418035 |
Target: 5'- --gGGGAGCCgGAGaggaggGCCCCGgCGCCg -3' miRNA: 3'- cagUCCUCGGgCUC------UGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 2241 | 0.72 | 0.39394 |
Target: 5'- cUCcGGA-CCCGGGcGCUCCGUCGCCUg -3' miRNA: 3'- cAGuCCUcGGGCUC-UGGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 80496 | 0.72 | 0.418035 |
Target: 5'- cGUCgAGGAGCCgGAGuccugcguCCCCG-CGCCc -3' miRNA: 3'- -CAG-UCCUCGGgCUCu-------GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 185966 | 0.73 | 0.370764 |
Target: 5'- -cCuGGAGCUCGAGGgcaacggccuguCCCUGUCGCCg -3' miRNA: 3'- caGuCCUCGGGCUCU------------GGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 19365 | 0.73 | 0.355839 |
Target: 5'- cGUCGGGGGCUCGGcGGCCUCG-CGCUc -3' miRNA: 3'- -CAGUCCUCGGGCU-CUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 7270 | 0.73 | 0.327276 |
Target: 5'- cGUCGGGAucggGCgCGAGGCCCCGgggGCCg -3' miRNA: 3'- -CAGUCCU----CGgGCUCUGGGGCag-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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