Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 152754 | 0.68 | 0.625096 |
Target: 5'- -cCGGGAGCCCGgucgaaaaggaucGGACCCCG-CGgUUc -3' miRNA: 3'- caGUCCUCGGGC-------------UCUGGGGCaGCgGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 220336 | 0.68 | 0.635603 |
Target: 5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3' miRNA: 3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95708 | 0.68 | 0.634648 |
Target: 5'- -aCGGGGGgCCGGGAggggaagacggcuCCCCGUcccCGCCg -3' miRNA: 3'- caGUCCUCgGGCUCU-------------GGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 172277 | 0.68 | 0.626051 |
Target: 5'- cUCGGucGCCCGGGACaucugCCGUCGCg- -3' miRNA: 3'- cAGUCcuCGGGCUCUGg----GGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 134630 | 0.68 | 0.635603 |
Target: 5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3' miRNA: 3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 225815 | 0.68 | 0.616503 |
Target: 5'- -cCGGGuGGCCUGGGACCUCGa-GCCg -3' miRNA: 3'- caGUCC-UCGGGCUCUGGGGCagCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 117116 | 0.68 | 0.616503 |
Target: 5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3' miRNA: 3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 55466 | 0.68 | 0.626051 |
Target: 5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3' miRNA: 3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 154760 | 0.68 | 0.616503 |
Target: 5'- cGUCGcGGuGCCCGucuCCCCGUgucCGCCa -3' miRNA: 3'- -CAGU-CCuCGGGCucuGGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 217475 | 0.68 | 0.616503 |
Target: 5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3' miRNA: 3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 148677 | 0.68 | 0.606966 |
Target: 5'- -cCAGcGGgCCGuGGCCCuCGUCGCCg -3' miRNA: 3'- caGUCcUCgGGCuCUGGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 221118 | 0.68 | 0.606013 |
Target: 5'- cUCGGGAGCuuccgacggcgCUGAGGaccgcguCCCCGUCGUCg -3' miRNA: 3'- cAGUCCUCG-----------GGCUCU-------GGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 110841 | 0.68 | 0.597445 |
Target: 5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3' miRNA: 3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 107192 | 0.68 | 0.606013 |
Target: 5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3' miRNA: 3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118798 | 0.68 | 0.616503 |
Target: 5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3' miRNA: 3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 115107 | 0.68 | 0.616503 |
Target: 5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3' miRNA: 3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 222588 | 0.68 | 0.620322 |
Target: 5'- cGUCGcGGAGgaggccuguccggccCCCGGGGCCUCG-CGCCc -3' miRNA: 3'- -CAGU-CCUC---------------GGGCUCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 70528 | 0.67 | 0.654693 |
Target: 5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3' miRNA: 3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 25945 | 0.67 | 0.70202 |
Target: 5'- -cCGGGGGCCaCGAgGGCCUCGUaguagcggaGCCa -3' miRNA: 3'- caGUCCUCGG-GCU-CUGGGGCAg--------CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 130482 | 0.67 | 0.70202 |
Target: 5'- gGUCGGG-GCCCGA---UCCGUCGCa- -3' miRNA: 3'- -CAGUCCuCGGGCUcugGGGCAGCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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