miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 225815 0.68 0.616503
Target:  5'- -cCGGGuGGCCUGGGACCUCGa-GCCg -3'
miRNA:   3'- caGUCC-UCGGGCUCUGGGGCagCGGa -5'
9032 3' -62.3 NC_002512.2 + 118798 0.68 0.616503
Target:  5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3'
miRNA:   3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 217475 0.68 0.616503
Target:  5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3'
miRNA:   3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 117116 0.68 0.616503
Target:  5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3'
miRNA:   3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5'
9032 3' -62.3 NC_002512.2 + 154760 0.68 0.616503
Target:  5'- cGUCGcGGuGCCCGucuCCCCGUgucCGCCa -3'
miRNA:   3'- -CAGU-CCuCGGGCucuGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 115107 0.68 0.616503
Target:  5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3'
miRNA:   3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 222588 0.68 0.620322
Target:  5'- cGUCGcGGAGgaggccuguccggccCCCGGGGCCUCG-CGCCc -3'
miRNA:   3'- -CAGU-CCUC---------------GGGCUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 152754 0.68 0.625096
Target:  5'- -cCGGGAGCCCGgucgaaaaggaucGGACCCCG-CGgUUc -3'
miRNA:   3'- caGUCCUCGGGC-------------UCUGGGGCaGCgGA- -5'
9032 3' -62.3 NC_002512.2 + 172277 0.68 0.626051
Target:  5'- cUCGGucGCCCGGGACaucugCCGUCGCg- -3'
miRNA:   3'- cAGUCcuCGGGCUCUGg----GGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 135635 0.68 0.626051
Target:  5'- cUCGGGGGUCCGGGuCgCCGgcgGCCUg -3'
miRNA:   3'- cAGUCCUCGGGCUCuGgGGCag-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 55466 0.68 0.626051
Target:  5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3'
miRNA:   3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 95708 0.68 0.634648
Target:  5'- -aCGGGGGgCCGGGAggggaagacggcuCCCCGUcccCGCCg -3'
miRNA:   3'- caGUCCUCgGGCUCU-------------GGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 111771 0.68 0.635603
Target:  5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3'
miRNA:   3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127570 0.68 0.635603
Target:  5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3'
miRNA:   3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 134630 0.68 0.635603
Target:  5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3'
miRNA:   3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 220336 0.68 0.635603
Target:  5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3'
miRNA:   3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 44084 0.68 0.645153
Target:  5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3'
miRNA:   3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 11214 0.67 0.654693
Target:  5'- -cCGGcGGGCCCGGuGugCCCGgguaucCGCCUc -3'
miRNA:   3'- caGUC-CUCGGGCU-CugGGGCa-----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 70528 0.67 0.654693
Target:  5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3'
miRNA:   3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 128852 0.67 0.654693
Target:  5'- cUCGGGcGCCgCGcGGGCCCUGgugcugCGCCUg -3'
miRNA:   3'- cAGUCCuCGG-GC-UCUGGGGCa-----GCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.