Results 121 - 140 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 218625 | 0.66 | 0.720643 |
Target: 5'- --aAGGAcGCgcgUCGGGACCCUGUCGCg- -3' miRNA: 3'- cagUCCU-CG---GGCUCUGGGGCAGCGga -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 58901 | 0.66 | 0.720643 |
Target: 5'- ---cGGAGCCCGAGcCCuCCGUCcUCa -3' miRNA: 3'- caguCCUCGGGCUCuGG-GGCAGcGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 186820 | 0.66 | 0.720643 |
Target: 5'- -cCGGGAccgguGCCucggCGAGGCCCugcgCGUCGCCg -3' miRNA: 3'- caGUCCU-----CGG----GCUCUGGG----GCAGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 87978 | 0.66 | 0.729859 |
Target: 5'- cGUCGGG-GCCgCGGcGCCCCGaCGCg- -3' miRNA: 3'- -CAGUCCuCGG-GCUcUGGGGCaGCGga -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 173490 | 0.66 | 0.729859 |
Target: 5'- aUCGGGAGaCCUGucucGACCUCGcccCGCCg -3' miRNA: 3'- cAGUCCUC-GGGCu---CUGGGGCa--GCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 121618 | 0.66 | 0.729859 |
Target: 5'- uUCAGGcAGCCCGGcgaaucgcGGCUCCG-CGuCCUg -3' miRNA: 3'- cAGUCC-UCGGGCU--------CUGGGGCaGC-GGA- -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 89239 | 0.66 | 0.729859 |
Target: 5'- --aAGGAucgguucucGUUCGAGAUCaCCGUCGCCg -3' miRNA: 3'- cagUCCU---------CGGGCUCUGG-GGCAGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 142033 | 0.66 | 0.729859 |
Target: 5'- -cCGGGGGCCggcgacccgccgCGAGGgCCCGaCGCCc -3' miRNA: 3'- caGUCCUCGG------------GCUCUgGGGCaGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 130114 | 0.66 | 0.73809 |
Target: 5'- gGUCgagaGGGAGCUgGAGGCCCgggguggUGUCGCg- -3' miRNA: 3'- -CAG----UCCUCGGgCUCUGGG-------GCAGCGga -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 146806 | 0.66 | 0.739001 |
Target: 5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3' miRNA: 3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 4653 | 0.66 | 0.739001 |
Target: 5'- -aCGGGAG-CgGAGGCCCCGcCGgCg -3' miRNA: 3'- caGUCCUCgGgCUCUGGGGCaGCgGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 96727 | 0.66 | 0.739001 |
Target: 5'- uUCGcGAGCgCGAuGGCUCCGcCGCCUg -3' miRNA: 3'- cAGUcCUCGgGCU-CUGGGGCaGCGGA- -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 209087 | 0.66 | 0.739001 |
Target: 5'- -gCGGGAGCCCGAcGuCCggGUCGUCa -3' miRNA: 3'- caGUCCUCGGGCU-CuGGggCAGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 136442 | 0.66 | 0.74716 |
Target: 5'- --gAGGGGaCCCGGGGCCacuacauCCG-CGCCg -3' miRNA: 3'- cagUCCUC-GGGCUCUGG-------GGCaGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 194533 | 0.66 | 0.748062 |
Target: 5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3' miRNA: 3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 37309 | 0.66 | 0.748062 |
Target: 5'- -gCGGGAcgguccGCuCCGAGGCCCCGgccacggacgCGCUg -3' miRNA: 3'- caGUCCU------CG-GGCUCUGGGGCa---------GCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 123196 | 0.66 | 0.748062 |
Target: 5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3' miRNA: 3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 126971 | 0.66 | 0.748062 |
Target: 5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3' miRNA: 3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 81446 | 0.66 | 0.748062 |
Target: 5'- --gGGGGGCCCG-GcCCCCGUCcuCCc -3' miRNA: 3'- cagUCCUCGGGCuCuGGGGCAGc-GGa -5' |
|||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 20498 | 0.66 | 0.751662 |
Target: 5'- -gCAGGAGCUggccgaggucgaaguCGGGACacaCgGUCGCCa -3' miRNA: 3'- caGUCCUCGG---------------GCUCUGg--GgCAGCGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home