miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 55466 0.68 0.626051
Target:  5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3'
miRNA:   3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 172277 0.68 0.626051
Target:  5'- cUCGGucGCCCGGGACaucugCCGUCGCg- -3'
miRNA:   3'- cAGUCcuCGGGCUCUGg----GGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 152754 0.68 0.625096
Target:  5'- -cCGGGAGCCCGgucgaaaaggaucGGACCCCG-CGgUUc -3'
miRNA:   3'- caGUCCUCGGGC-------------UCUGGGGCaGCgGA- -5'
9032 3' -62.3 NC_002512.2 + 222588 0.68 0.620322
Target:  5'- cGUCGcGGAGgaggccuguccggccCCCGGGGCCUCG-CGCCc -3'
miRNA:   3'- -CAGU-CCUC---------------GGGCUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 118798 0.68 0.616503
Target:  5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3'
miRNA:   3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 117116 0.68 0.616503
Target:  5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3'
miRNA:   3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5'
9032 3' -62.3 NC_002512.2 + 154760 0.68 0.616503
Target:  5'- cGUCGcGGuGCCCGucuCCCCGUgucCGCCa -3'
miRNA:   3'- -CAGU-CCuCGGGCucuGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 225815 0.68 0.616503
Target:  5'- -cCGGGuGGCCUGGGACCUCGa-GCCg -3'
miRNA:   3'- caGUCC-UCGGGCUCUGGGGCagCGGa -5'
9032 3' -62.3 NC_002512.2 + 115107 0.68 0.616503
Target:  5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3'
miRNA:   3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 217475 0.68 0.616503
Target:  5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3'
miRNA:   3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 148677 0.68 0.606966
Target:  5'- -cCAGcGGgCCGuGGCCCuCGUCGCCg -3'
miRNA:   3'- caGUCcUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 107192 0.68 0.606013
Target:  5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3'
miRNA:   3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 221118 0.68 0.606013
Target:  5'- cUCGGGAGCuuccgacggcgCUGAGGaccgcguCCCCGUCGUCg -3'
miRNA:   3'- cAGUCCUCG-----------GGCUCU-------GGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 110841 0.68 0.597445
Target:  5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3'
miRNA:   3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 8365 0.69 0.587946
Target:  5'- -gCGGGAGCgCCGAgGAUCCgCGgCGCCg -3'
miRNA:   3'- caGUCCUCG-GGCU-CUGGG-GCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 95980 0.69 0.587946
Target:  5'- -gCAGGAgguaggccagcGCCCGGGACCgCCGgccgaGCCg -3'
miRNA:   3'- caGUCCU-----------CGGGCUCUGG-GGCag---CGGa -5'
9032 3' -62.3 NC_002512.2 + 124816 0.69 0.587946
Target:  5'- -cCGGGAGacuacCCCGAcacGCCgCCGUCGCCg -3'
miRNA:   3'- caGUCCUC-----GGGCUc--UGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 224019 0.69 0.587946
Target:  5'- aGUCGGacGAcGCCCGGGACUCCGacggggcCGCCg -3'
miRNA:   3'- -CAGUC--CU-CGGGCUCUGGGGCa------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 196224 0.69 0.578475
Target:  5'- -gCGuGAGCCUcuGAGACCCUGUcCGCCg -3'
miRNA:   3'- caGUcCUCGGG--CUCUGGGGCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 222217 0.69 0.57753
Target:  5'- cGUCGGGguGGCCguCGGGGCCgcguccuUCGUCGCCg -3'
miRNA:   3'- -CAGUCC--UCGG--GCUCUGG-------GGCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.