miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 105515 0.67 0.683192
Target:  5'- --gGGGGGCuCUGgcuGGACCCCGgCGCCc -3'
miRNA:   3'- cagUCCUCG-GGC---UCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 107192 0.68 0.606013
Target:  5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3'
miRNA:   3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 107954 0.69 0.550284
Target:  5'- -cCGcGGGUCCGGGACCgCCGcCGCCUc -3'
miRNA:   3'- caGUcCUCGGGCUCUGG-GGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 108440 0.69 0.569038
Target:  5'- -cCGGGGGCCgGGGGgucccuCCCCGggcggCGCCg -3'
miRNA:   3'- caGUCCUCGGgCUCU------GGGGCa----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 109077 0.66 0.720643
Target:  5'- cGUCccGGGUCCGAGAgaCCGcCGCCg -3'
miRNA:   3'- -CAGucCUCGGGCUCUggGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 110841 0.68 0.597445
Target:  5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3'
miRNA:   3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 111665 0.67 0.70202
Target:  5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3'
miRNA:   3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 111771 0.68 0.635603
Target:  5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3'
miRNA:   3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 111830 0.67 0.664218
Target:  5'- gGUCcGGGGUCCGGuGgucguagagcGCCgCCGUCGCCg -3'
miRNA:   3'- -CAGuCCUCGGGCU-C----------UGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 112064 0.69 0.569038
Target:  5'- -cCAGGAcgucgGUCCGccgcGAgCCCGUCGCCUg -3'
miRNA:   3'- caGUCCU-----CGGGCu---CUgGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 112986 0.79 0.154882
Target:  5'- cGUCcgAGGAGCCCGccccGGCCCCGcCGCCa -3'
miRNA:   3'- -CAG--UCCUCGGGCu---CUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 115107 0.68 0.616503
Target:  5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3'
miRNA:   3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 117116 0.68 0.616503
Target:  5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3'
miRNA:   3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5'
9032 3' -62.3 NC_002512.2 + 118175 0.66 0.757035
Target:  5'- ------cGCCgGAGACUCCGUCGUCa -3'
miRNA:   3'- caguccuCGGgCUCUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 118583 0.67 0.664218
Target:  5'- gGUCAGcuGGUCCcAGACCCCGggCGUCUg -3'
miRNA:   3'- -CAGUCc-UCGGGcUCUGGGGCa-GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 118798 0.68 0.616503
Target:  5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3'
miRNA:   3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 119575 0.71 0.460111
Target:  5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3'
miRNA:   3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 121439 0.69 0.569038
Target:  5'- aGUCGgccccGGAGCCCuGAGggguccGCCCCG-CGCCc -3'
miRNA:   3'- -CAGU-----CCUCGGG-CUC------UGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 121618 0.66 0.729859
Target:  5'- uUCAGGcAGCCCGGcgaaucgcGGCUCCG-CGuCCUg -3'
miRNA:   3'- cAGUCC-UCGGGCU--------CUGGGGCaGC-GGA- -5'
9032 3' -62.3 NC_002512.2 + 122867 0.67 0.683192
Target:  5'- cGUCGGGAgcgcGCCCGGcucucggccGACCCCGgcccgggCGUCc -3'
miRNA:   3'- -CAGUCCU----CGGGCU---------CUGGGGCa------GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.