miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 123174 0.66 0.720643
Target:  5'- -aCAGGAGCgcggucaucCCgGAGAgCCCCaUCGCCg -3'
miRNA:   3'- caGUCCUCG---------GG-CUCU-GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 123196 0.66 0.748062
Target:  5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3'
miRNA:   3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 123285 0.66 0.757035
Target:  5'- -aCAuGGAGCgCCGGcuGGCCCgGuUCGCCa -3'
miRNA:   3'- caGU-CCUCG-GGCU--CUGGGgC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 124816 0.69 0.587946
Target:  5'- -cCGGGAGacuacCCCGAcacGCCgCCGUCGCCg -3'
miRNA:   3'- caGUCCUC-----GGGCUc--UGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 126388 0.8 0.137388
Target:  5'- -cCGGGAgagcGCCCGGGGCCCCGggCGCCg -3'
miRNA:   3'- caGUCCU----CGGGCUCUGGGGCa-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 126929 0.67 0.67372
Target:  5'- -cCGGGA-CCaCGAguucuccgcgGACUCCGUCGCCUg -3'
miRNA:   3'- caGUCCUcGG-GCU----------CUGGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 126971 0.66 0.748062
Target:  5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3'
miRNA:   3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127179 0.67 0.67372
Target:  5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3'
miRNA:   3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127570 0.68 0.635603
Target:  5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3'
miRNA:   3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127657 0.66 0.720643
Target:  5'- gGUCGGacaGAGCgCCGAgGACCUCGUCGaCg -3'
miRNA:   3'- -CAGUC---CUCG-GGCU-CUGGGGCAGCgGa -5'
9032 3' -62.3 NC_002512.2 + 127935 0.71 0.426263
Target:  5'- -gUAGGGuaCCCGAGGCCCCGuUCGCUc -3'
miRNA:   3'- caGUCCUc-GGGCUCUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 128852 0.67 0.654693
Target:  5'- cUCGGGcGCCgCGcGGGCCCUGgugcugCGCCUg -3'
miRNA:   3'- cAGUCCuCGG-GC-UCUGGGGCa-----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 129567 0.69 0.540977
Target:  5'- aGUCccgAGGcGCCgGGacgucGGCCCCGUCGCCc -3'
miRNA:   3'- -CAG---UCCuCGGgCU-----CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 130114 0.66 0.73809
Target:  5'- gGUCgagaGGGAGCUgGAGGCCCgggguggUGUCGCg- -3'
miRNA:   3'- -CAG----UCCUCGGgCUCUGGG-------GCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 130291 0.7 0.477561
Target:  5'- ---cGGGGCCCGGGACgugCCGUaCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCUGg--GGCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 130482 0.67 0.70202
Target:  5'- gGUCGGG-GCCCGA---UCCGUCGCa- -3'
miRNA:   3'- -CAGUCCuCGGGCUcugGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 130498 0.75 0.251956
Target:  5'- -cCGGGAGUCCG-GACCCCGaCGCUg -3'
miRNA:   3'- caGUCCUCGGGCuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 134630 0.68 0.635603
Target:  5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3'
miRNA:   3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 134776 0.66 0.757035
Target:  5'- cGUCGGcGGGCCCG-----CCGUCGCCg -3'
miRNA:   3'- -CAGUC-CUCGGGCucuggGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 135221 0.71 0.460111
Target:  5'- --gGGGGGCCCcccGGCCCCGggcCGCCUc -3'
miRNA:   3'- cagUCCUCGGGcu-CUGGGGCa--GCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.