miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 135635 0.68 0.626051
Target:  5'- cUCGGGGGUCCGGGuCgCCGgcgGCCUg -3'
miRNA:   3'- cAGUCCUCGGGCUCuGgGGCag-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 136442 0.66 0.74716
Target:  5'- --gAGGGGaCCCGGGGCCacuacauCCG-CGCCg -3'
miRNA:   3'- cagUCCUC-GGGCUCUGG-------GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 142033 0.66 0.729859
Target:  5'- -cCGGGGGCCggcgacccgccgCGAGGgCCCGaCGCCc -3'
miRNA:   3'- caGUCCUCGG------------GCUCUgGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 142297 0.67 0.664218
Target:  5'- -aCGGGGGaUCCGAcGCgUCCGUCGCCg -3'
miRNA:   3'- caGUCCUC-GGGCUcUG-GGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 143522 0.73 0.327276
Target:  5'- -cCAGGGcgcGCCUGGcGGCCUCGUCGCCg -3'
miRNA:   3'- caGUCCU---CGGGCU-CUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 146806 0.66 0.739001
Target:  5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 147443 0.66 0.711361
Target:  5'- uUCGGGAGCgggaCCGAcGCCCCcUCGUCc -3'
miRNA:   3'- cAGUCCUCG----GGCUcUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 148677 0.68 0.606966
Target:  5'- -cCAGcGGgCCGuGGCCCuCGUCGCCg -3'
miRNA:   3'- caGUCcUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 152563 1.06 0.002089
Target:  5'- gGUCAGGAGCCCGAGACCCCGUCGCCUc -3'
miRNA:   3'- -CAGUCCUCGGGCUCUGGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 152754 0.68 0.625096
Target:  5'- -cCGGGAGCCCGgucgaaaaggaucGGACCCCG-CGgUUc -3'
miRNA:   3'- caGUCCUCGGGC-------------UCUGGGGCaGCgGA- -5'
9032 3' -62.3 NC_002512.2 + 154760 0.68 0.616503
Target:  5'- cGUCGcGGuGCCCGucuCCCCGUgucCGCCa -3'
miRNA:   3'- -CAGU-CCuCGGGCucuGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 155676 0.66 0.757035
Target:  5'- cGUCGGGA--CCGcGGCCCacggaCGUCGCCg -3'
miRNA:   3'- -CAGUCCUcgGGCuCUGGG-----GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 162247 0.76 0.235504
Target:  5'- -cCGGGGGCCCGuggacGACCgUGUCGCCg -3'
miRNA:   3'- caGUCCUCGGGCu----CUGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 165265 0.7 0.486407
Target:  5'- cGUCGcGGAGCCCcGGACCCCuuucagCGUCUc -3'
miRNA:   3'- -CAGU-CCUCGGGcUCUGGGGca----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 171735 0.69 0.569038
Target:  5'- aUCGGGAcgucgaGCUCGGGGCCCuCGcccucUCGCCUc -3'
miRNA:   3'- cAGUCCU------CGGGCUCUGGG-GC-----AGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 172277 0.68 0.626051
Target:  5'- cUCGGucGCCCGGGACaucugCCGUCGCg- -3'
miRNA:   3'- cAGUCcuCGGGCUCUGg----GGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 173490 0.66 0.729859
Target:  5'- aUCGGGAGaCCUGucucGACCUCGcccCGCCg -3'
miRNA:   3'- cAGUCCUC-GGGCu---CUGGGGCa--GCGGa -5'
9032 3' -62.3 NC_002512.2 + 175316 0.66 0.711361
Target:  5'- uGUCAGGGuGCggauCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- -CAGUCCU-CG----GGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 175511 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 175704 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.