Results 121 - 140 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 181423 | 0.67 | 0.692628 |
Target: 5'- uUCAGGAugGCCgucagcugCGGGAUCaCCGUCGUCUu -3' miRNA: 3'- cAGUCCU--CGG--------GCUCUGG-GGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 185966 | 0.73 | 0.370764 |
Target: 5'- -cCuGGAGCUCGAGGgcaacggccuguCCCUGUCGCCg -3' miRNA: 3'- caGuCCUCGGGCUCU------------GGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 186820 | 0.66 | 0.720643 |
Target: 5'- -cCGGGAccgguGCCucggCGAGGCCCugcgCGUCGCCg -3' miRNA: 3'- caGUCCU-----CGG----GCUCUGGG----GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 194533 | 0.66 | 0.748062 |
Target: 5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3' miRNA: 3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 196224 | 0.69 | 0.578475 |
Target: 5'- -gCGuGAGCCUcuGAGACCCUGUcCGCCg -3' miRNA: 3'- caGUcCUCGGG--CUCUGGGGCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 205655 | 0.67 | 0.692628 |
Target: 5'- cGUCGGcGGGCCCGAcGCCUCGgacaGCUc -3' miRNA: 3'- -CAGUC-CUCGGGCUcUGGGGCag--CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 206124 | 0.67 | 0.67372 |
Target: 5'- gGUCAGGcGCagCGGGGCguCCgGUCGCCa -3' miRNA: 3'- -CAGUCCuCGg-GCUCUG--GGgCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 206974 | 0.7 | 0.494436 |
Target: 5'- -gCAGGAagaagccGCCCGGGAUgCCCGUgGCCc -3' miRNA: 3'- caGUCCU-------CGGGCUCUG-GGGCAgCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 209087 | 0.66 | 0.739001 |
Target: 5'- -gCGGGAGCCCGAcGuCCggGUCGUCa -3' miRNA: 3'- caGUCCUCGGGCU-CuGGggCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 211974 | 0.7 | 0.495331 |
Target: 5'- cGUCAGGAcgcgGCCgucguccuCGGGGCCgCCGcCGCCUa -3' miRNA: 3'- -CAGUCCU----CGG--------GCUCUGG-GGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 213008 | 0.67 | 0.664218 |
Target: 5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3' miRNA: 3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 213348 | 0.66 | 0.757035 |
Target: 5'- aUCcGGAGCCaggGGGACgCCCG-CGCUg -3' miRNA: 3'- cAGuCCUCGGg--CUCUG-GGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 215083 | 0.71 | 0.434588 |
Target: 5'- cGUCGGcGGGaCCGAgGACUUCGUCGCCg -3' miRNA: 3'- -CAGUC-CUCgGGCU-CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 216185 | 0.7 | 0.522529 |
Target: 5'- cUCGGGAucgcGCCCGuGAUCaccgccgcggCCGUCGCCUc -3' miRNA: 3'- cAGUCCU----CGGGCuCUGG----------GGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 217475 | 0.68 | 0.616503 |
Target: 5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3' miRNA: 3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 217763 | 0.7 | 0.486407 |
Target: 5'- -cCccGGGCCCGu--CCCCGUCGCCg -3' miRNA: 3'- caGucCUCGGGCucuGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 218030 | 0.67 | 0.696391 |
Target: 5'- -gUAGGGGUCCuccgcgucccuCCCCGUCGCCg -3' miRNA: 3'- caGUCCUCGGGcucu-------GGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 218625 | 0.66 | 0.720643 |
Target: 5'- --aAGGAcGCgcgUCGGGACCCUGUCGCg- -3' miRNA: 3'- cagUCCU-CG---GGCUCUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 220336 | 0.68 | 0.635603 |
Target: 5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3' miRNA: 3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 220499 | 0.67 | 0.70202 |
Target: 5'- -gCAGcGAGgCCGuGGCCUgCGUCGCCc -3' miRNA: 3'- caGUC-CUCgGGCuCUGGG-GCAGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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