Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 127657 | 0.66 | 0.720643 |
Target: 5'- gGUCGGacaGAGCgCCGAgGACCUCGUCGaCg -3' miRNA: 3'- -CAGUC---CUCG-GGCU-CUGGGGCAGCgGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127570 | 0.68 | 0.635603 |
Target: 5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3' miRNA: 3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 127179 | 0.67 | 0.67372 |
Target: 5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3' miRNA: 3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126971 | 0.66 | 0.748062 |
Target: 5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3' miRNA: 3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126929 | 0.67 | 0.67372 |
Target: 5'- -cCGGGA-CCaCGAguucuccgcgGACUCCGUCGCCUg -3' miRNA: 3'- caGUCCUcGG-GCU----------CUGGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 126388 | 0.8 | 0.137388 |
Target: 5'- -cCGGGAgagcGCCCGGGGCCCCGggCGCCg -3' miRNA: 3'- caGUCCU----CGGGCUCUGGGGCa-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 124816 | 0.69 | 0.587946 |
Target: 5'- -cCGGGAGacuacCCCGAcacGCCgCCGUCGCCg -3' miRNA: 3'- caGUCCUC-----GGGCUc--UGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 123285 | 0.66 | 0.757035 |
Target: 5'- -aCAuGGAGCgCCGGcuGGCCCgGuUCGCCa -3' miRNA: 3'- caGU-CCUCG-GGCU--CUGGGgC-AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 123196 | 0.66 | 0.748062 |
Target: 5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3' miRNA: 3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 123174 | 0.66 | 0.720643 |
Target: 5'- -aCAGGAGCgcggucaucCCgGAGAgCCCCaUCGCCg -3' miRNA: 3'- caGUCCUCG---------GG-CUCU-GGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 122867 | 0.67 | 0.683192 |
Target: 5'- cGUCGGGAgcgcGCCCGGcucucggccGACCCCGgcccgggCGUCc -3' miRNA: 3'- -CAGUCCU----CGGGCU---------CUGGGGCa------GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 121618 | 0.66 | 0.729859 |
Target: 5'- uUCAGGcAGCCCGGcgaaucgcGGCUCCG-CGuCCUg -3' miRNA: 3'- cAGUCC-UCGGGCU--------CUGGGGCaGC-GGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 121439 | 0.69 | 0.569038 |
Target: 5'- aGUCGgccccGGAGCCCuGAGggguccGCCCCG-CGCCc -3' miRNA: 3'- -CAGU-----CCUCGGG-CUC------UGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 119575 | 0.71 | 0.460111 |
Target: 5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3' miRNA: 3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118798 | 0.68 | 0.616503 |
Target: 5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3' miRNA: 3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118583 | 0.67 | 0.664218 |
Target: 5'- gGUCAGcuGGUCCcAGACCCCGggCGUCUg -3' miRNA: 3'- -CAGUCc-UCGGGcUCUGGGGCa-GCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 118175 | 0.66 | 0.757035 |
Target: 5'- ------cGCCgGAGACUCCGUCGUCa -3' miRNA: 3'- caguccuCGGgCUCUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 117116 | 0.68 | 0.616503 |
Target: 5'- -aCAGcGGCaCGGGGCCCCGUCGgCg -3' miRNA: 3'- caGUCcUCGgGCUCUGGGGCAGCgGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 115107 | 0.68 | 0.616503 |
Target: 5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3' miRNA: 3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 112986 | 0.79 | 0.154882 |
Target: 5'- cGUCcgAGGAGCCCGccccGGCCCCGcCGCCa -3' miRNA: 3'- -CAG--UCCUCGGGCu---CUGGGGCaGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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