Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 112064 | 0.69 | 0.569038 |
Target: 5'- -cCAGGAcgucgGUCCGccgcGAgCCCGUCGCCUg -3' miRNA: 3'- caGUCCU-----CGGGCu---CUgGGGCAGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111830 | 0.67 | 0.664218 |
Target: 5'- gGUCcGGGGUCCGGuGgucguagagcGCCgCCGUCGCCg -3' miRNA: 3'- -CAGuCCUCGGGCU-C----------UGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111771 | 0.68 | 0.635603 |
Target: 5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3' miRNA: 3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 111665 | 0.67 | 0.70202 |
Target: 5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3' miRNA: 3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 110841 | 0.68 | 0.597445 |
Target: 5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3' miRNA: 3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 109077 | 0.66 | 0.720643 |
Target: 5'- cGUCccGGGUCCGAGAgaCCGcCGCCg -3' miRNA: 3'- -CAGucCUCGGGCUCUggGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 108440 | 0.69 | 0.569038 |
Target: 5'- -cCGGGGGCCgGGGGgucccuCCCCGggcggCGCCg -3' miRNA: 3'- caGUCCUCGGgCUCU------GGGGCa----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 107954 | 0.69 | 0.550284 |
Target: 5'- -cCGcGGGUCCGGGACCgCCGcCGCCUc -3' miRNA: 3'- caGUcCUCGGGCUCUGG-GGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 107192 | 0.68 | 0.606013 |
Target: 5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3' miRNA: 3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 105515 | 0.67 | 0.683192 |
Target: 5'- --gGGGGGCuCUGgcuGGACCCCGgCGCCc -3' miRNA: 3'- cagUCCUCG-GGC---UCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 103487 | 0.74 | 0.29401 |
Target: 5'- cGUCGacGGcGCCCGGGGCCCCGggCGCUc -3' miRNA: 3'- -CAGU--CCuCGGGCUCUGGGGCa-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 103209 | 0.67 | 0.683192 |
Target: 5'- -gCGGGGGUauCCGAGgcgGCUCgCGUCGCCg -3' miRNA: 3'- caGUCCUCG--GGCUC---UGGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 101184 | 0.7 | 0.485519 |
Target: 5'- uUCAGGAugguguuGUCCGAGACgCCGgcguUCGCCa -3' miRNA: 3'- cAGUCCU-------CGGGCUCUGgGGC----AGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 100303 | 0.69 | 0.550284 |
Target: 5'- cGUCGGGGGCgaCGGGGCcgacguCCCGgCGCCUc -3' miRNA: 3'- -CAGUCCUCGg-GCUCUG------GGGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 99659 | 0.7 | 0.504328 |
Target: 5'- ---cGGGGCCCaGAGGuuCCCCGcCGCCg -3' miRNA: 3'- caguCCUCGGG-CUCU--GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 98464 | 0.66 | 0.757035 |
Target: 5'- -gCGGGAGCCCGccgucACCgUGUCGCa- -3' miRNA: 3'- caGUCCUCGGGCuc---UGGgGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 96727 | 0.66 | 0.739001 |
Target: 5'- uUCGcGAGCgCGAuGGCUCCGcCGCCUg -3' miRNA: 3'- cAGUcCUCGgGCU-CUGGGGCaGCGGA- -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 96547 | 0.69 | 0.531724 |
Target: 5'- ---cGGGGCCgGGGAUCCCGgaCGCCa -3' miRNA: 3'- caguCCUCGGgCUCUGGGGCa-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95980 | 0.69 | 0.587946 |
Target: 5'- -gCAGGAgguaggccagcGCCCGGGACCgCCGgccgaGCCg -3' miRNA: 3'- caGUCCU-----------CGGGCUCUGG-GGCag---CGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 95708 | 0.68 | 0.634648 |
Target: 5'- -aCGGGGGgCCGGGAggggaagacggcuCCCCGUcccCGCCg -3' miRNA: 3'- caGUCCUCgGGCUCU-------------GGGGCA---GCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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