Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9032 | 3' | -62.3 | NC_002512.2 | + | 93202 | 0.67 | 0.692628 |
Target: 5'- cGUCAgGGAGUCCGucuccauGACCUCG-CGCUc -3' miRNA: 3'- -CAGU-CCUCGGGCu------CUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91978 | 0.67 | 0.682246 |
Target: 5'- cGUCcGGAgggccgcGUCCGGGucuCCCgCGUCGCCg -3' miRNA: 3'- -CAGuCCU-------CGGGCUCu--GGG-GCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 91475 | 0.67 | 0.672771 |
Target: 5'- gGUCAGGuacuugguGGCCCGcggcucgaagcgcAGGCUCCGUUGCg- -3' miRNA: 3'- -CAGUCC--------UCGGGC-------------UCUGGGGCAGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 89239 | 0.66 | 0.729859 |
Target: 5'- --aAGGAucgguucucGUUCGAGAUCaCCGUCGCCg -3' miRNA: 3'- cagUCCU---------CGGGCUCUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 87978 | 0.66 | 0.729859 |
Target: 5'- cGUCGGG-GCCgCGGcGCCCCGaCGCg- -3' miRNA: 3'- -CAGUCCuCGG-GCUcUGGGGCaGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 82909 | 0.67 | 0.692628 |
Target: 5'- gGUCAGGcAGCggaagucucggCCGcGGCCgCCGUCGUCg -3' miRNA: 3'- -CAGUCC-UCG-----------GGCuCUGG-GGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 82475 | 0.66 | 0.711361 |
Target: 5'- --aAGGGGCCC-AGACgCCGUuugaCGCCg -3' miRNA: 3'- cagUCCUCGGGcUCUGgGGCA----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 82174 | 0.74 | 0.287682 |
Target: 5'- cGUCAGGAgGgUCGAGAgCCCGUcCGCCg -3' miRNA: 3'- -CAGUCCU-CgGGCUCUgGGGCA-GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 81446 | 0.66 | 0.748062 |
Target: 5'- --gGGGGGCCCG-GcCCCCGUCcuCCc -3' miRNA: 3'- cagUCCUCGGGCuCuGGGGCAGc-GGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 80496 | 0.72 | 0.418035 |
Target: 5'- cGUCgAGGAGCCgGAGuccugcguCCCCG-CGCCc -3' miRNA: 3'- -CAG-UCCUCGGgCUCu-------GGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 74622 | 0.66 | 0.757035 |
Target: 5'- ---cGGAGCgCGAGACCgCCG-CGCg- -3' miRNA: 3'- caguCCUCGgGCUCUGG-GGCaGCGga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 73115 | 0.66 | 0.720643 |
Target: 5'- ---uGGucGCCCGAGACgCCCGUCGaguaCa -3' miRNA: 3'- caguCCu-CGGGCUCUG-GGGCAGCg---Ga -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 70528 | 0.67 | 0.654693 |
Target: 5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3' miRNA: 3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 68144 | 0.71 | 0.43208 |
Target: 5'- -gCAGGAGCggcgccucCCGAuuguaggucaagacGAUCCCGUCGCCg -3' miRNA: 3'- caGUCCUCG--------GGCU--------------CUGGGGCAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 64623 | 0.67 | 0.692628 |
Target: 5'- --aAGGGGUCCGGGGCUCCGcgacgCGUCc -3' miRNA: 3'- cagUCCUCGGGCUCUGGGGCa----GCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 58901 | 0.66 | 0.720643 |
Target: 5'- ---cGGAGCCCGAGcCCuCCGUCcUCa -3' miRNA: 3'- caguCCUCGGGCUCuGG-GGCAGcGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 55466 | 0.68 | 0.626051 |
Target: 5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3' miRNA: 3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 49451 | 0.67 | 0.664218 |
Target: 5'- -aCGGGcgccGCCCGGGGCgCCGUCaCCg -3' miRNA: 3'- caGUCCu---CGGGCUCUGgGGCAGcGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 44084 | 0.68 | 0.645153 |
Target: 5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3' miRNA: 3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5' |
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9032 | 3' | -62.3 | NC_002512.2 | + | 42192 | 0.71 | 0.434588 |
Target: 5'- gGUCGGGGGUUCGGGuuCCCGgUGCCUc -3' miRNA: 3'- -CAGUCCUCGGGCUCugGGGCaGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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