miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 18928 0.69 0.531724
Target:  5'- -aCAGG-GCCCGGacGACCUCGUUgGCCUc -3'
miRNA:   3'- caGUCCuCGGGCU--CUGGGGCAG-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 35919 0.69 0.531724
Target:  5'- gGUCAGGAGCcgCCGGcGGCCUCucgCGCCa -3'
miRNA:   3'- -CAGUCCUCG--GGCU-CUGGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 55466 0.68 0.626051
Target:  5'- ---uGGuAGCCCcgacgGAGGCCCCGgCGCCg -3'
miRNA:   3'- caguCC-UCGGG-----CUCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 135635 0.68 0.626051
Target:  5'- cUCGGGGGUCCGGGuCgCCGgcgGCCUg -3'
miRNA:   3'- cAGUCCUCGGGCUCuGgGGCag-CGGA- -5'
9032 3' -62.3 NC_002512.2 + 111771 0.68 0.635603
Target:  5'- cGUCgccaGGGAGCCCcgcuGGGACgCCCacggguuguugGUCGCCg -3'
miRNA:   3'- -CAG----UCCUCGGG----CUCUG-GGG-----------CAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127570 0.68 0.635603
Target:  5'- -cCGGGAgGCCCGAcgGACCguccgcgaCGUCGCCc -3'
miRNA:   3'- caGUCCU-CGGGCU--CUGGg-------GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 44084 0.68 0.645153
Target:  5'- --gAGGAGCUCGGGGuaggcccuCCCC-UCGCCg -3'
miRNA:   3'- cagUCCUCGGGCUCU--------GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 70528 0.67 0.654693
Target:  5'- --uGGGAcGCCCc-GACCCCGaCGCCg -3'
miRNA:   3'- cagUCCU-CGGGcuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 11214 0.67 0.654693
Target:  5'- -cCGGcGGGCCCGGuGugCCCGgguaucCGCCUc -3'
miRNA:   3'- caGUC-CUCGGGCU-CugGGGCa-----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 111830 0.67 0.664218
Target:  5'- gGUCcGGGGUCCGGuGgucguagagcGCCgCCGUCGCCg -3'
miRNA:   3'- -CAGuCCUCGGGCU-C----------UGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 115107 0.68 0.616503
Target:  5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3'
miRNA:   3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 118798 0.68 0.616503
Target:  5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3'
miRNA:   3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 100303 0.69 0.550284
Target:  5'- cGUCGGGGGCgaCGGGGCcgacguCCCGgCGCCUc -3'
miRNA:   3'- -CAGUCCUCGg-GCUCUG------GGGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 2166 0.69 0.569038
Target:  5'- gGUCgAGGAGUCgGGGAccguaccgcgcCCCCGcCGCCg -3'
miRNA:   3'- -CAG-UCCUCGGgCUCU-----------GGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 6511 0.69 0.569038
Target:  5'- cUCAGGAGCCCGugauAGACgCCGgaUCGgCg -3'
miRNA:   3'- cAGUCCUCGGGC----UCUGgGGC--AGCgGa -5'
9032 3' -62.3 NC_002512.2 + 112064 0.69 0.569038
Target:  5'- -cCAGGAcgucgGUCCGccgcGAgCCCGUCGCCUg -3'
miRNA:   3'- caGUCCU-----CGGGCu---CUgGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 16568 0.69 0.572808
Target:  5'- cGUCGGGcAGCCCGuAGGCCaggaaaucgacgaggUCGUCgGCCa -3'
miRNA:   3'- -CAGUCC-UCGGGC-UCUGG---------------GGCAG-CGGa -5'
9032 3' -62.3 NC_002512.2 + 8365 0.69 0.587946
Target:  5'- -gCGGGAGCgCCGAgGAUCCgCGgCGCCg -3'
miRNA:   3'- caGUCCUCG-GGCU-CUGGG-GCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 110841 0.68 0.597445
Target:  5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3'
miRNA:   3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 107192 0.68 0.606013
Target:  5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3'
miRNA:   3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.