miRNA display CGI


Results 121 - 140 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 173490 0.66 0.729859
Target:  5'- aUCGGGAGaCCUGucucGACCUCGcccCGCCg -3'
miRNA:   3'- cAGUCCUC-GGGCu---CUGGGGCa--GCGGa -5'
9032 3' -62.3 NC_002512.2 + 209087 0.66 0.739001
Target:  5'- -gCGGGAGCCCGAcGuCCggGUCGUCa -3'
miRNA:   3'- caGUCCUCGGGCU-CuGGggCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 146806 0.66 0.739001
Target:  5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 136442 0.66 0.74716
Target:  5'- --gAGGGGaCCCGGGGCCacuacauCCG-CGCCg -3'
miRNA:   3'- cagUCCUC-GGGCUCUGG-------GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 194533 0.66 0.748062
Target:  5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3'
miRNA:   3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 155676 0.66 0.757035
Target:  5'- cGUCGGGA--CCGcGGCCCacggaCGUCGCCg -3'
miRNA:   3'- -CAGUCCUcgGGCuCUGGG-----GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 218625 0.66 0.720643
Target:  5'- --aAGGAcGCgcgUCGGGACCCUGUCGCg- -3'
miRNA:   3'- cagUCCU-CG---GGCUCUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 147443 0.66 0.711361
Target:  5'- uUCGGGAGCgggaCCGAcGCCCCcUCGUCc -3'
miRNA:   3'- cAGUCCUCG----GGCUcUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 134630 0.68 0.635603
Target:  5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3'
miRNA:   3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 220336 0.68 0.635603
Target:  5'- --gGGGGGCCgGAcGGCCUCGUcaaCGCCg -3'
miRNA:   3'- cagUCCUCGGgCU-CUGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 128852 0.67 0.654693
Target:  5'- cUCGGGcGCCgCGcGGGCCCUGgugcugCGCCUg -3'
miRNA:   3'- cAGUCCuCGG-GC-UCUGGGGCa-----GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 213008 0.67 0.664218
Target:  5'- cGUC-GG-GCCCGGGGCCCucucgaggugCGUcCGCCg -3'
miRNA:   3'- -CAGuCCuCGGGCUCUGGG----------GCA-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 127179 0.67 0.67372
Target:  5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3'
miRNA:   3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 206124 0.67 0.67372
Target:  5'- gGUCAGGcGCagCGGGGCguCCgGUCGCCa -3'
miRNA:   3'- -CAGUCCuCGg-GCUCUG--GGgCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 181423 0.67 0.692628
Target:  5'- uUCAGGAugGCCgucagcugCGGGAUCaCCGUCGUCUu -3'
miRNA:   3'- cAGUCCU--CGG--------GCUCUGG-GGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 205655 0.67 0.692628
Target:  5'- cGUCGGcGGGCCCGAcGCCUCGgacaGCUc -3'
miRNA:   3'- -CAGUC-CUCGGGCUcUGGGGCag--CGGa -5'
9032 3' -62.3 NC_002512.2 + 218030 0.67 0.696391
Target:  5'- -gUAGGGGUCCuccgcgucccuCCCCGUCGCCg -3'
miRNA:   3'- caGUCCUCGGGcucu-------GGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 111665 0.67 0.70202
Target:  5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3'
miRNA:   3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 220499 0.67 0.70202
Target:  5'- -gCAGcGAGgCCGuGGCCUgCGUCGCCc -3'
miRNA:   3'- caGUC-CUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 41776 0.66 0.711361
Target:  5'- -aCAGc-GUCUGuGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCcuCGGGCuCUGGGGCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.