miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 154760 0.68 0.616503
Target:  5'- cGUCGcGGuGCCCGucuCCCCGUgucCGCCa -3'
miRNA:   3'- -CAGU-CCuCGGGCucuGGGGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 111665 0.67 0.70202
Target:  5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3'
miRNA:   3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 194533 0.66 0.748062
Target:  5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3'
miRNA:   3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 217475 0.68 0.616503
Target:  5'- -gCGGcGAGCUCGcGAUCCCGgCGCCg -3'
miRNA:   3'- caGUC-CUCGGGCuCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 155676 0.66 0.757035
Target:  5'- cGUCGGGA--CCGcGGCCCacggaCGUCGCCg -3'
miRNA:   3'- -CAGUCCUcgGGCuCUGGG-----GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 119575 0.71 0.460111
Target:  5'- -gCGGGAGCCCGgcGGGuCCCCucgCGCCa -3'
miRNA:   3'- caGUCCUCGGGC--UCU-GGGGca-GCGGa -5'
9032 3' -62.3 NC_002512.2 + 146806 0.66 0.739001
Target:  5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 217763 0.7 0.486407
Target:  5'- -cCccGGGCCCGu--CCCCGUCGCCg -3'
miRNA:   3'- caGucCUCGGGCucuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 226485 0.7 0.495331
Target:  5'- ---cGGGGCCCGGGcgcuCCCC-UCGCCg -3'
miRNA:   3'- caguCCUCGGGCUCu---GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 107954 0.69 0.550284
Target:  5'- -cCGcGGGUCCGGGACCgCCGcCGCCUc -3'
miRNA:   3'- caGUcCUCGGGCUCUGG-GGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 171735 0.69 0.569038
Target:  5'- aUCGGGAcgucgaGCUCGGGGCCCuCGcccucUCGCCUc -3'
miRNA:   3'- cAGUCCU------CGGGCUCUGGG-GC-----AGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 95980 0.69 0.587946
Target:  5'- -gCAGGAgguaggccagcGCCCGGGACCgCCGgccgaGCCg -3'
miRNA:   3'- caGUCCU-----------CGGGCUCUGG-GGCag---CGGa -5'
9032 3' -62.3 NC_002512.2 + 148677 0.68 0.606966
Target:  5'- -cCAGcGGgCCGuGGCCCuCGUCGCCg -3'
miRNA:   3'- caGUCcUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 152754 0.68 0.625096
Target:  5'- -cCGGGAGCCCGgucgaaaaggaucGGACCCCG-CGgUUc -3'
miRNA:   3'- caGUCCUCGGGC-------------UCUGGGGCaGCgGA- -5'
9032 3' -62.3 NC_002512.2 + 134630 0.68 0.635603
Target:  5'- uUCAGGAGCCgCGcGGCCCUccgGaCGCCc -3'
miRNA:   3'- cAGUCCUCGG-GCuCUGGGG---CaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 127179 0.67 0.67372
Target:  5'- -gCAGG-GUCCGGGccACUgCGUCGCCg -3'
miRNA:   3'- caGUCCuCGGGCUC--UGGgGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 205655 0.67 0.692628
Target:  5'- cGUCGGcGGGCCCGAcGCCUCGgacaGCUc -3'
miRNA:   3'- -CAGUC-CUCGGGCUcUGGGGCag--CGGa -5'
9032 3' -62.3 NC_002512.2 + 147443 0.66 0.711361
Target:  5'- uUCGGGAGCgggaCCGAcGCCCCcUCGUCc -3'
miRNA:   3'- cAGUCCUCG----GGCUcUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 123174 0.66 0.720643
Target:  5'- -aCAGGAGCgcggucaucCCgGAGAgCCCCaUCGCCg -3'
miRNA:   3'- caGUCCUCG---------GG-CUCU-GGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 87978 0.66 0.729859
Target:  5'- cGUCGGG-GCCgCGGcGCCCCGaCGCg- -3'
miRNA:   3'- -CAGUCCuCGG-GCUcUGGGGCaGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.