miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 109077 0.66 0.720643
Target:  5'- cGUCccGGGUCCGAGAgaCCGcCGCCg -3'
miRNA:   3'- -CAGucCUCGGGCUCUggGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 41776 0.66 0.711361
Target:  5'- -aCAGc-GUCUGuGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCcuCGGGCuCUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 181423 0.67 0.692628
Target:  5'- uUCAGGAugGCCgucagcugCGGGAUCaCCGUCGUCUu -3'
miRNA:   3'- cAGUCCU--CGG--------GCUCUGG-GGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 217763 0.7 0.486407
Target:  5'- -cCccGGGCCCGu--CCCCGUCGCCg -3'
miRNA:   3'- caGucCUCGGGCucuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 121439 0.69 0.569038
Target:  5'- aGUCGgccccGGAGCCCuGAGggguccGCCCCG-CGCCc -3'
miRNA:   3'- -CAGU-----CCUCGGG-CUC------UGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 227363 0.69 0.531724
Target:  5'- --gAGGAgGCCCGGGGCCgCCGgCGUCg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG-GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 82475 0.66 0.711361
Target:  5'- --aAGGGGCCC-AGACgCCGUuugaCGCCg -3'
miRNA:   3'- cagUCCUCGGGcUCUGgGGCA----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 25945 0.67 0.70202
Target:  5'- -cCGGGGGCCaCGAgGGCCUCGUaguagcggaGCCa -3'
miRNA:   3'- caGUCCUCGG-GCU-CUGGGGCAg--------CGGa -5'
9032 3' -62.3 NC_002512.2 + 175316 0.66 0.711361
Target:  5'- uGUCAGGGuGCggauCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- -CAGUCCU-CG----GGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 8328 0.66 0.711361
Target:  5'- -cCGGGAGCCgGAGACCgCGggucCGgCg -3'
miRNA:   3'- caGUCCUCGGgCUCUGGgGCa---GCgGa -5'
9032 3' -62.3 NC_002512.2 + 115107 0.68 0.616503
Target:  5'- cGUCGGGAcGCCgu--GCCCCGUCGCg- -3'
miRNA:   3'- -CAGUCCU-CGGgcucUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 175511 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 2241 0.72 0.39394
Target:  5'- cUCcGGA-CCCGGGcGCUCCGUCGCCUg -3'
miRNA:   3'- cAGuCCUcGGGCUC-UGGGGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 118798 0.68 0.616503
Target:  5'- -gCGGGAGCUgUGGGcCCCCGUCGUg- -3'
miRNA:   3'- caGUCCUCGG-GCUCuGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 107192 0.68 0.606013
Target:  5'- -gCGGGAucaccuugaacucGCCCG-GGCCCC-UCGCCg -3'
miRNA:   3'- caGUCCU-------------CGGGCuCUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 110841 0.68 0.597445
Target:  5'- aUCAGGAGCaggCGcugguuGAUCuCCGUCGCCa -3'
miRNA:   3'- cAGUCCUCGg--GCu-----CUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 39527 0.66 0.720643
Target:  5'- -aCAGGAccgGgCCGAcGcCCCCGUCGUCg -3'
miRNA:   3'- caGUCCU---CgGGCU-CuGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 30531 0.66 0.720643
Target:  5'- -gCuGGAGCCgGuGAUCUCGuUCGCCg -3'
miRNA:   3'- caGuCCUCGGgCuCUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 37735 0.71 0.460111
Target:  5'- -gCAGGGGCCgCGGGAUcuggCCCG-CGCCg -3'
miRNA:   3'- caGUCCUCGG-GCUCUG----GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 29707 0.7 0.477561
Target:  5'- cGUCucggAGGAGCCCauGACCgUGUCGCCc -3'
miRNA:   3'- -CAG----UCCUCGGGcuCUGGgGCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.