miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 82475 0.66 0.711361
Target:  5'- --aAGGGGCCC-AGACgCCGUuugaCGCCg -3'
miRNA:   3'- cagUCCUCGGGcUCUGgGGCA----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 175511 0.66 0.711361
Target:  5'- aUCGGGAcgugGaCCCGGgcuGACCCCGcUCGUCa -3'
miRNA:   3'- cAGUCCU----C-GGGCU---CUGGGGC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 41776 0.66 0.711361
Target:  5'- -aCAGc-GUCUGuGAUCCCGUCGCCg -3'
miRNA:   3'- caGUCcuCGGGCuCUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 147443 0.66 0.711361
Target:  5'- uUCGGGAGCgggaCCGAcGCCCCcUCGUCc -3'
miRNA:   3'- cAGUCCUCG----GGCUcUGGGGcAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 111665 0.67 0.70202
Target:  5'- cGUCcccGAGCaCGAgGGCCCCGUCGCa- -3'
miRNA:   3'- -CAGuc-CUCGgGCU-CUGGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 220499 0.67 0.70202
Target:  5'- -gCAGcGAGgCCGuGGCCUgCGUCGCCc -3'
miRNA:   3'- caGUC-CUCgGGCuCUGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 25945 0.67 0.70202
Target:  5'- -cCGGGGGCCaCGAgGGCCUCGUaguagcggaGCCa -3'
miRNA:   3'- caGUCCUCGG-GCU-CUGGGGCAg--------CGGa -5'
9032 3' -62.3 NC_002512.2 + 130482 0.67 0.70202
Target:  5'- gGUCGGG-GCCCGA---UCCGUCGCa- -3'
miRNA:   3'- -CAGUCCuCGGGCUcugGGGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 218030 0.67 0.696391
Target:  5'- -gUAGGGGUCCuccgcgucccuCCCCGUCGCCg -3'
miRNA:   3'- caGUCCUCGGGcucu-------GGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 93202 0.67 0.692628
Target:  5'- cGUCAgGGAGUCCGucuccauGACCUCG-CGCUc -3'
miRNA:   3'- -CAGU-CCUCGGGCu------CUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 64623 0.67 0.692628
Target:  5'- --aAGGGGUCCGGGGCUCCGcgacgCGUCc -3'
miRNA:   3'- cagUCCUCGGGCUCUGGGGCa----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 5532 0.67 0.692628
Target:  5'- --gAGGucucccGCCCGcGACCCCGgcgcggCGCCg -3'
miRNA:   3'- cagUCCu-----CGGGCuCUGGGGCa-----GCGGa -5'
9032 3' -62.3 NC_002512.2 + 82909 0.67 0.692628
Target:  5'- gGUCAGGcAGCggaagucucggCCGcGGCCgCCGUCGUCg -3'
miRNA:   3'- -CAGUCC-UCG-----------GGCuCUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 181423 0.67 0.692628
Target:  5'- uUCAGGAugGCCgucagcugCGGGAUCaCCGUCGUCUu -3'
miRNA:   3'- cAGUCCU--CGG--------GCUCUGG-GGCAGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 205655 0.67 0.692628
Target:  5'- cGUCGGcGGGCCCGAcGCCUCGgacaGCUc -3'
miRNA:   3'- -CAGUC-CUCGGGCUcUGGGGCag--CGGa -5'
9032 3' -62.3 NC_002512.2 + 122867 0.67 0.683192
Target:  5'- cGUCGGGAgcgcGCCCGGcucucggccGACCCCGgcccgggCGUCc -3'
miRNA:   3'- -CAGUCCU----CGGGCU---------CUGGGGCa------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 105515 0.67 0.683192
Target:  5'- --gGGGGGCuCUGgcuGGACCCCGgCGCCc -3'
miRNA:   3'- cagUCCUCG-GGC---UCUGGGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 103209 0.67 0.683192
Target:  5'- -gCGGGGGUauCCGAGgcgGCUCgCGUCGCCg -3'
miRNA:   3'- caGUCCUCG--GGCUC---UGGG-GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3407 0.67 0.683192
Target:  5'- --gGGGAGCgCCcGGGCCCCGgccuccuccCGCCUc -3'
miRNA:   3'- cagUCCUCG-GGcUCUGGGGCa--------GCGGA- -5'
9032 3' -62.3 NC_002512.2 + 91978 0.67 0.682246
Target:  5'- cGUCcGGAgggccgcGUCCGGGucuCCCgCGUCGCCg -3'
miRNA:   3'- -CAGuCCU-------CGGGCUCu--GGG-GCAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.