miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 152656 0.66 0.901137
Target:  5'- cCG-CCCGGgcgcucgUUCGCC-UCCCGGucGCu -3'
miRNA:   3'- -GCaGGGCCa------GAGCGGaAGGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 151553 1.1 0.002364
Target:  5'- cCGUCCCGGUCUCGCCUUCCCGAGAGCc -3'
miRNA:   3'- -GCAGGGCCAGAGCGGAAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 151082 0.69 0.747013
Target:  5'- gGUCUCGGUCcgCGCCggagacgugcacgugUCUCGGGGcGCg -3'
miRNA:   3'- gCAGGGCCAGa-GCGGa--------------AGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 151007 0.67 0.86089
Target:  5'- gGUCUCGGUCUCcauggcgacgcgaGCCacCUCGAG-GCg -3'
miRNA:   3'- gCAGGGCCAGAG-------------CGGaaGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 149643 0.68 0.823604
Target:  5'- aCGgagCCCGGcC-CGCacgUCCCG-GAGCu -3'
miRNA:   3'- -GCa--GGGCCaGaGCGga-AGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 148813 0.68 0.781759
Target:  5'- cCGUCUCGGagCUCGU---CCUGGGGGCg -3'
miRNA:   3'- -GCAGGGCCa-GAGCGgaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 147872 0.69 0.746103
Target:  5'- cCGaCCCGGgcgacggCUCGCCgcgaccgccCCCGAGAcGCc -3'
miRNA:   3'- -GCaGGGCCa------GAGCGGaa-------GGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 147664 0.66 0.907023
Target:  5'- cCGUCaCCGGcCcCGCUUcccgcCCCGGGAGg -3'
miRNA:   3'- -GCAG-GGCCaGaGCGGAa----GGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 147276 0.66 0.907023
Target:  5'- cCGaCCCGGga-CGCCgcgcgucgUUCCCGGGGGg -3'
miRNA:   3'- -GCaGGGCCagaGCGG--------AAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 142207 0.66 0.907023
Target:  5'- gCGUCCCGucggucucgacGUCgUCGCCUUCgCG-GAacGCg -3'
miRNA:   3'- -GCAGGGC-----------CAG-AGCGGAAGgGCuCU--CG- -5'
9033 5' -59 NC_002512.2 + 141496 0.66 0.907023
Target:  5'- uGUCCCGGuUCUCGgaCUaCgUgGAGGGCa -3'
miRNA:   3'- gCAGGGCC-AGAGCg-GAaG-GgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 137236 0.68 0.80728
Target:  5'- cCGUCCCGGaUC-CGCgCgggUCCCGGcgccGGCg -3'
miRNA:   3'- -GCAGGGCC-AGaGCG-Ga--AGGGCUc---UCG- -5'
9033 5' -59 NC_002512.2 + 134684 0.66 0.872833
Target:  5'- cCGUCaccagCGGgcgCUCGCCgggcugcccgacaUCCUGGGGGCc -3'
miRNA:   3'- -GCAGg----GCCa--GAGCGGa------------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 134290 0.66 0.907023
Target:  5'- gGUCCCGGaggaUCGUCUUCgaggacgucgCCGGGgccGGCg -3'
miRNA:   3'- gCAGGGCCag--AGCGGAAG----------GGCUC---UCG- -5'
9033 5' -59 NC_002512.2 + 133867 0.67 0.830752
Target:  5'- aCGUCCUGGggcggCUCgaggagcggcucgGCCggcggUCCCGGGcGCu -3'
miRNA:   3'- -GCAGGGCCa----GAG-------------CGGa----AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 132035 0.68 0.781759
Target:  5'- cCGUCUCGGUCgUCGCCUccgcuUCCCccGcGCc -3'
miRNA:   3'- -GCAGGGCCAG-AGCGGA-----AGGGcuCuCG- -5'
9033 5' -59 NC_002512.2 + 131798 0.67 0.86868
Target:  5'- cCGUCCCcGUCaucCGCUcggacacgUCCCGGGAGa -3'
miRNA:   3'- -GCAGGGcCAGa--GCGGa-------AGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 129745 0.67 0.84541
Target:  5'- uCGUCgaCCGGUC-CGCCgccgUCCacgacggugacgGAGAGCu -3'
miRNA:   3'- -GCAG--GGCCAGaGCGGa---AGGg-----------CUCUCG- -5'
9033 5' -59 NC_002512.2 + 128100 0.66 0.888751
Target:  5'- cCGaCCCGGgcCUCcuCC-UCCCGAGGGUu -3'
miRNA:   3'- -GCaGGGCCa-GAGc-GGaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 126845 0.7 0.6996
Target:  5'- uCGUCgCGGUCgUCGCCgucguccucUUCCCGuccgggacuGGGGCu -3'
miRNA:   3'- -GCAGgGCCAG-AGCGG---------AAGGGC---------UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.