miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 5' -52.6 NC_002512.2 + 137652 0.66 0.98889
Target:  5'- gUCGUCCGAGucccGGuCGUCGGgcacgaacuGCGAGAAg -3'
miRNA:   3'- -AGUAGGUUCua--CC-GCGGCC---------UGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 191473 0.66 0.98889
Target:  5'- ---gCCGAGuacgaGGCGCCGGACa---- -3'
miRNA:   3'- aguaGGUUCua---CCGCGGCCUGcuuuu -5'
9034 5' -52.6 NC_002512.2 + 166248 0.66 0.98889
Target:  5'- gCGUCCAGGAcGGCGCUcgucagGGACc---- -3'
miRNA:   3'- aGUAGGUUCUaCCGCGG------CCUGcuuuu -5'
9034 5' -52.6 NC_002512.2 + 223917 0.66 0.98889
Target:  5'- gCGggCGAGA-GGUcgaGCCGGACGggGAg -3'
miRNA:   3'- aGUagGUUCUaCCG---CGGCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 217881 0.66 0.98889
Target:  5'- gCGUCCGAGAUcGGCGgCCGcGucguCGAGc- -3'
miRNA:   3'- aGUAGGUUCUA-CCGC-GGC-Cu---GCUUuu -5'
9034 5' -52.6 NC_002512.2 + 53843 0.66 0.98742
Target:  5'- ---cCCGGGGgcGGCGCCGGGaGGAGAg -3'
miRNA:   3'- aguaGGUUCUa-CCGCGGCCUgCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 71562 0.66 0.98742
Target:  5'- -gGUCCGgagcgcGGAcucGCGCCGGACGAc-- -3'
miRNA:   3'- agUAGGU------UCUac-CGCGGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 78535 0.66 0.98742
Target:  5'- cCAUCUugAGGcaacAUGGCGCCGGcCGGGc- -3'
miRNA:   3'- aGUAGG--UUC----UACCGCGGCCuGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 135011 0.66 0.98742
Target:  5'- uUCGUCCuGGAggauucgGGcCGgCGGACGGAu- -3'
miRNA:   3'- -AGUAGGuUCUa------CC-GCgGCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 174790 0.66 0.98742
Target:  5'- cUCGUCCAGGAgcaGGgGuuGGACc---- -3'
miRNA:   3'- -AGUAGGUUCUa--CCgCggCCUGcuuuu -5'
9034 5' -52.6 NC_002512.2 + 10209 0.66 0.987265
Target:  5'- cUCGUCCucGGgcGGCGCgcccagaucccgaCGGGCGAAc- -3'
miRNA:   3'- -AGUAGGu-UCuaCCGCG-------------GCCUGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 98088 0.67 0.985804
Target:  5'- -uGUCCGagcggaugacggGGAcGGCGCgGGACGAc-- -3'
miRNA:   3'- agUAGGU------------UCUaCCGCGgCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 122746 0.67 0.985804
Target:  5'- aCGcgCUGAGggGGCGCCcgggccggaGGACGAGGAc -3'
miRNA:   3'- aGUa-GGUUCuaCCGCGG---------CCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 90101 0.67 0.984034
Target:  5'- cCggCCuGGAggGuGCGCCGGACGAu-- -3'
miRNA:   3'- aGuaGGuUCUa-C-CGCGGCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 74177 0.67 0.982102
Target:  5'- -gAUCCAGGuggaGGCGCCGGcacagggcgGCGAc-- -3'
miRNA:   3'- agUAGGUUCua--CCGCGGCC---------UGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 135974 0.67 0.979999
Target:  5'- cCGUCUggGAgGGCGCgGGGuuCGggGGa -3'
miRNA:   3'- aGUAGGuuCUaCCGCGgCCU--GCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 109847 0.67 0.979999
Target:  5'- gCGUCgGGGAccggcgUGGCGgCGGugGGGAc -3'
miRNA:   3'- aGUAGgUUCU------ACCGCgGCCugCUUUu -5'
9034 5' -52.6 NC_002512.2 + 211332 0.67 0.979999
Target:  5'- -gGUCCGGGcccgGGCGCUGGGgGAc-- -3'
miRNA:   3'- agUAGGUUCua--CCGCGGCCUgCUuuu -5'
9034 5' -52.6 NC_002512.2 + 180424 0.67 0.979999
Target:  5'- gUCGUCCucgguGAcGGCGCCccGGGCGGc-- -3'
miRNA:   3'- -AGUAGGuu---CUaCCGCGG--CCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 36572 0.67 0.977717
Target:  5'- ---gCCGGGA-GGCGgCGGugGAGAc -3'
miRNA:   3'- aguaGGUUCUaCCGCgGCCugCUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.