miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 208797 0.66 0.976871
Target:  5'- ---aGACGG-CgGuCGCCCCGGAGCg -3'
miRNA:   3'- ugagUUGCCuGaCuGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 162146 0.66 0.974414
Target:  5'- gGCUC-GCGaGGCcGGCACgCCGAccgcgaaagcGGCCg -3'
miRNA:   3'- -UGAGuUGC-CUGaCUGUGgGGCU----------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 227345 0.66 0.97915
Target:  5'- ---gGACGGAgaGACgggacggaggaGgCCCGggGCCg -3'
miRNA:   3'- ugagUUGCCUgaCUG-----------UgGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 158247 0.66 0.974414
Target:  5'- gGCUCggUGGcCgaguACACCCUGGAGUUc -3'
miRNA:   3'- -UGAGuuGCCuGac--UGUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 150908 0.66 0.971773
Target:  5'- uCUCGgccGCGGAC-GACGCUaaguCCG-AGCCg -3'
miRNA:   3'- uGAGU---UGCCUGaCUGUGG----GGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 18295 0.66 0.973641
Target:  5'- uCUCGGCGGAgcagaaggggaugggGACGCCCCGcauGCg -3'
miRNA:   3'- uGAGUUGCCUga-------------CUGUGGGGCuu-CGg -5'
9036 3' -54.7 NC_002512.2 + 14447 0.66 0.972852
Target:  5'- cGCUCccGgGGGCUGACgaucuugaugaaggcGCCCUuGGGCCa -3'
miRNA:   3'- -UGAGu-UgCCUGACUG---------------UGGGGcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 32411 0.66 0.971773
Target:  5'- --cCGAUGGGCU----CCCCGAAGCUg -3'
miRNA:   3'- ugaGUUGCCUGAcuguGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 129849 0.66 0.971773
Target:  5'- uCUCAGCGcccGGCgGAggaGCCCCuuGAGGCCg -3'
miRNA:   3'- uGAGUUGC---CUGaCUg--UGGGG--CUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 155023 0.66 0.976871
Target:  5'- ---gAGCGGAaagaugaUGACGCCCgCGGgaGGCCc -3'
miRNA:   3'- ugagUUGCCUg------ACUGUGGG-GCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 73806 0.66 0.981054
Target:  5'- cCUCGACGaACUGccgGCGCCCgGcgucgauGAGCCu -3'
miRNA:   3'- uGAGUUGCcUGAC---UGUGGGgC-------UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 221033 0.66 0.976871
Target:  5'- cAC-CAACGGGgUGcCGCCCgGcagcGAGCCc -3'
miRNA:   3'- -UGaGUUGCCUgACuGUGGGgC----UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 90062 0.66 0.974414
Target:  5'- aACUCGcccACGucCUugGACACCcgaCCGAGGCCc -3'
miRNA:   3'- -UGAGU---UGCcuGA--CUGUGG---GGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 224015 0.66 0.974414
Target:  5'- gACgaguCGGAC-GACGCCCgggacuccgaCGggGCCg -3'
miRNA:   3'- -UGaguuGCCUGaCUGUGGG----------GCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 35656 0.67 0.955594
Target:  5'- uGCUCGAC-GAC-GACACCggcaCGAAGUCc -3'
miRNA:   3'- -UGAGUUGcCUGaCUGUGGg---GCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 27593 0.67 0.965912
Target:  5'- aGCgCGGCGGcAC-GGCGCCCCGGucCCa -3'
miRNA:   3'- -UGaGUUGCC-UGaCUGUGGGGCUucGG- -5'
9036 3' -54.7 NC_002512.2 + 18088 0.67 0.959243
Target:  5'- uGCgccgCGGCGGGacGGC-CCCCGcGGCCa -3'
miRNA:   3'- -UGa---GUUGCCUgaCUGuGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 118769 0.67 0.968941
Target:  5'- gACcCcGCGGGC-GGCGCCuCCGccGCCg -3'
miRNA:   3'- -UGaGuUGCCUGaCUGUGG-GGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 75102 0.67 0.962347
Target:  5'- gGCUCGacgucgccgccugGCGGACacggggagacgGGCACCgCGAcGCCg -3'
miRNA:   3'- -UGAGU-------------UGCCUGa----------CUGUGGgGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 9548 0.67 0.968941
Target:  5'- gGCgUUGACGaGGCcguccGGCcCCCCGGAGCCc -3'
miRNA:   3'- -UG-AGUUGC-CUGa----CUGuGGGGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.