Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 3' | -55.6 | NC_002512.2 | + | 27960 | 0.71 | 0.782503 |
Target: 5'- cCGGGCCCGUcgccGAUgGGCGGCCGGg-CGa -3' miRNA: 3'- -GUCUGGGCA----CUAaCUGCCGGCUgaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 29954 | 0.73 | 0.678603 |
Target: 5'- aCAG-CCgGUGAgcGGCGGCCGGCcgCGa -3' miRNA: 3'- -GUCuGGgCACUaaCUGCCGGCUGa-GC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 6512 | 0.68 | 0.931622 |
Target: 5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3' miRNA: 3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 79085 | 0.68 | 0.931622 |
Target: 5'- -cGACCCGUGAgUGACGGguCUGGgaCGu -3' miRNA: 3'- guCUGGGCACUaACUGCC--GGCUgaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 196876 | 0.67 | 0.943691 |
Target: 5'- aCAGGcgccCCCGaaaucccccuuccGAUUaGACGGCCGugUCGa -3' miRNA: 3'- -GUCU----GGGCa------------CUAA-CUGCCGGCugAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 9975 | 0.66 | 0.975371 |
Target: 5'- gAGACCgacgacgagaCGaGAggagGGCGGUCGGCUCGu -3' miRNA: 3'- gUCUGG----------GCaCUaa--CUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 217431 | 0.66 | 0.975371 |
Target: 5'- --uACCCGaGA-UGACGGCCGAUa-- -3' miRNA: 3'- gucUGGGCaCUaACUGCCGGCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 105109 | 0.66 | 0.972829 |
Target: 5'- cCGGACCCGgGAcUGcGCGGUCGuCUgGg -3' miRNA: 3'- -GUCUGGGCaCUaAC-UGCCGGCuGAgC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 2832 | 0.66 | 0.972829 |
Target: 5'- gCGGGCCCG-GAc-GACGGCgGGCa-- -3' miRNA: 3'- -GUCUGGGCaCUaaCUGCCGgCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 84759 | 0.66 | 0.972565 |
Target: 5'- gUAGGCCagguaggCGUaGUaGAUGGCCGugUCGg -3' miRNA: 3'- -GUCUGG-------GCAcUAaCUGCCGGCugAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 101979 | 0.66 | 0.970103 |
Target: 5'- gCGGGCUCGUGGccgauccGACGGUCGAguacCUCa -3' miRNA: 3'- -GUCUGGGCACUaa-----CUGCCGGCU----GAGc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 55639 | 0.66 | 0.964074 |
Target: 5'- cCGGACCCGggcGAggGAggagaGGaCGACUCGa -3' miRNA: 3'- -GUCUGGGCa--CUaaCUg----CCgGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 60258 | 0.66 | 0.964074 |
Target: 5'- gCAGACCCGacaccugGAccUGcCGGCCGACcUGa -3' miRNA: 3'- -GUCUGGGCa------CUa-ACuGCCGGCUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 16650 | 0.66 | 0.960761 |
Target: 5'- gCAGAUCCGgccgGcgccGUUGGCGGCCacGACcCGg -3' miRNA: 3'- -GUCUGGGCa---C----UAACUGCCGG--CUGaGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 91920 | 0.67 | 0.953514 |
Target: 5'- gCGGcGCgCCGUc---GGCGGCCGACUUGg -3' miRNA: 3'- -GUC-UG-GGCAcuaaCUGCCGGCUGAGC- -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 9484 | 0.67 | 0.947104 |
Target: 5'- gCGGGCCCGcGAgcggcggguagacGACGGCCGGCc-- -3' miRNA: 3'- -GUCUGGGCaCUaa-----------CUGCCGGCUGagc -5' |
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9037 | 3' | -55.6 | NC_002512.2 | + | 117121 | 0.75 | 0.570244 |
Target: 5'- aAGGCcaCCGUGucgcggGACGGCCGGCUCu -3' miRNA: 3'- gUCUG--GGCACuaa---CUGCCGGCUGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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