miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 227410 0.66 0.944519
Target:  5'- -cCG-CCCGGACCUacucUCGCgCGCGGGc -3'
miRNA:   3'- guGCaGGGUCUGGGc---AGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 202028 0.67 0.909715
Target:  5'- cCGgGUCCCccGCCgGUCcgGCUCGCGGu -3'
miRNA:   3'- -GUgCAGGGucUGGgCAG--UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 203667 0.67 0.915328
Target:  5'- --gGUCCCGucUCCGUCGC-CACGGu -3'
miRNA:   3'- gugCAGGGUcuGGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 226472 0.66 0.925914
Target:  5'- gGCGggaggaggCCgGGGCCCGggCGCUCcccucgccGCGGGu -3'
miRNA:   3'- gUGCa-------GGgUCUGGGCa-GUGAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 181657 0.66 0.930886
Target:  5'- cCGCGUCCCGGuACagguaGUCGCgcccCGCGGc -3'
miRNA:   3'- -GUGCAGGGUC-UGgg---CAGUGa---GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 211329 0.67 0.897856
Target:  5'- gGCGgUCCGGGCCCGg-GCgCugGGGg -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGaGugCCC- -5'
9037 5' -57.6 NC_002512.2 + 123098 0.67 0.90389
Target:  5'- gACGUcgaCCCcGACCCcgaccaGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCA---GGGuCUGGG------CAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150394 0.66 0.940187
Target:  5'- gGCGUCCCcccucCCCGaacCGCcCACGGGc -3'
miRNA:   3'- gUGCAGGGucu--GGGCa--GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 195571 0.66 0.923866
Target:  5'- cCGgGUCCCugaaguGGACCgaggggaacgccaGUCACUCGgCGGGg -3'
miRNA:   3'- -GUgCAGGG------UCUGGg------------CAGUGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 77550 0.66 0.925914
Target:  5'- cUACGUCgCGGACggcggGUCGCcCACGGGc -3'
miRNA:   3'- -GUGCAGgGUCUGgg---CAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 152554 0.66 0.941945
Target:  5'- aACGcCCCGGGucaggagcccgagacCCCGUCGcCUCGCGa- -3'
miRNA:   3'- gUGCaGGGUCU---------------GGGCAGU-GAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 114159 0.66 0.944519
Target:  5'- gACGaCCCGGGCCCgGUC-CUCcuCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGG-CAGuGAGu-GCCc -5'
9037 5' -57.6 NC_002512.2 + 180439 0.67 0.897856
Target:  5'- gGCGcCCCGGgcggcGCCCGUCAUUUcucgACGGc -3'
miRNA:   3'- gUGCaGGGUC-----UGGGCAGUGAG----UGCCc -5'
9037 5' -57.6 NC_002512.2 + 189515 0.67 0.897856
Target:  5'- gACGcUCCGGGCCCGggcUCGC-CGCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGGC---AGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 217763 0.67 0.915328
Target:  5'- ----cCCCGGGCCCGUCcCcgUCGcCGGGg -3'
miRNA:   3'- gugcaGGGUCUGGGCAGuG--AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 128421 0.66 0.930886
Target:  5'- gGgGUCgCCGGAgCCC-UC-CUCGCGGGc -3'
miRNA:   3'- gUgCAG-GGUCU-GGGcAGuGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 154988 0.66 0.930886
Target:  5'- cCGCGUCCgucgcgacgaGGAUCCGUCGCccgucgUCcCGGGu -3'
miRNA:   3'- -GUGCAGGg---------UCUGGGCAGUG------AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 119076 0.66 0.944519
Target:  5'- -cUGUCCCucGACCgGUCGCgcgaggaggUGCGGGc -3'
miRNA:   3'- guGCAGGGu-CUGGgCAGUGa--------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150154 0.66 0.925914
Target:  5'- gGCGUCcgCCAG-CCCGUC-CUCGCucucccugccGGGc -3'
miRNA:   3'- gUGCAG--GGUCuGGGCAGuGAGUG----------CCC- -5'
9037 5' -57.6 NC_002512.2 + 132897 0.67 0.920728
Target:  5'- gGCGUCCCcggcGACgCGaUACUCucGCGGGc -3'
miRNA:   3'- gUGCAGGGu---CUGgGCaGUGAG--UGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.