miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9038 3' -54.5 NC_002512.2 + 87096 0.66 0.984722
Target:  5'- gGGGCGAcgugcugggGAGGUgGCGgaacaUCUCGGAg -3'
miRNA:   3'- -UCCGCUag-------CUCUAgCGCa----AGAGCCUg -5'
9038 3' -54.5 NC_002512.2 + 127025 0.66 0.984722
Target:  5'- uAGGCGuccccccgGUCGGGAUaCGCGUaCggcggCGGAg -3'
miRNA:   3'- -UCCGC--------UAGCUCUA-GCGCAaGa----GCCUg -5'
9038 3' -54.5 NC_002512.2 + 156477 0.66 0.984722
Target:  5'- gGGGCGG-CGGGcUCgGCGggCUgggCGGACa -3'
miRNA:   3'- -UCCGCUaGCUCuAG-CGCaaGA---GCCUG- -5'
9038 3' -54.5 NC_002512.2 + 75076 0.66 0.984722
Target:  5'- cGGCGAcgUCGAGG-CGCcgUUUCGGGg -3'
miRNA:   3'- uCCGCU--AGCUCUaGCGcaAGAGCCUg -5'
9038 3' -54.5 NC_002512.2 + 227223 0.66 0.982909
Target:  5'- gAGGCGGcggacCGGGAggCGCGg---CGGACg -3'
miRNA:   3'- -UCCGCUa----GCUCUa-GCGCaagaGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 166473 0.66 0.982909
Target:  5'- aGGGCGGggacggCGGGAcCGCGgg-UCGGAg -3'
miRNA:   3'- -UCCGCUa-----GCUCUaGCGCaagAGCCUg -5'
9038 3' -54.5 NC_002512.2 + 3246 0.66 0.982909
Target:  5'- cGGGUGA-CGAcGGUcCGCGggCUCGGuCc -3'
miRNA:   3'- -UCCGCUaGCU-CUA-GCGCaaGAGCCuG- -5'
9038 3' -54.5 NC_002512.2 + 77320 0.66 0.982909
Target:  5'- gAGGCGA-CGGGGUCuCGggCUCcugacccgGGGCg -3'
miRNA:   3'- -UCCGCUaGCUCUAGcGCaaGAG--------CCUG- -5'
9038 3' -54.5 NC_002512.2 + 56956 0.66 0.982909
Target:  5'- gAGGCGG-CGaAGGUgGCGagCUUGGAg -3'
miRNA:   3'- -UCCGCUaGC-UCUAgCGCaaGAGCCUg -5'
9038 3' -54.5 NC_002512.2 + 105087 0.66 0.982909
Target:  5'- cGGCGGUCG-GGUCGaCGUgUCUcccCGGGu -3'
miRNA:   3'- uCCGCUAGCuCUAGC-GCA-AGA---GCCUg -5'
9038 3' -54.5 NC_002512.2 + 217514 0.66 0.982527
Target:  5'- aAGGCGAgcUCGGGGggUCGCgGUUCaccugguugaacCGGGCg -3'
miRNA:   3'- -UCCGCU--AGCUCU--AGCG-CAAGa-----------GCCUG- -5'
9038 3' -54.5 NC_002512.2 + 195396 0.66 0.980938
Target:  5'- cGGGuCGAcCGGGAgcUCGUcUUCUCGGGg -3'
miRNA:   3'- -UCC-GCUaGCUCU--AGCGcAAGAGCCUg -5'
9038 3' -54.5 NC_002512.2 + 131033 0.66 0.980938
Target:  5'- aGGGCG-UCGGGGcCGCGggggaGGACg -3'
miRNA:   3'- -UCCGCuAGCUCUaGCGCaagagCCUG- -5'
9038 3' -54.5 NC_002512.2 + 134005 0.66 0.980938
Target:  5'- cGGGCGAccUCGAGAUccucggcgCGCGgccCUgGGAg -3'
miRNA:   3'- -UCCGCU--AGCUCUA--------GCGCaa-GAgCCUg -5'
9038 3' -54.5 NC_002512.2 + 217589 0.66 0.980732
Target:  5'- cGGCGGcgccgccUCgGGGGUCGuCGgcgaCUCGGGCg -3'
miRNA:   3'- uCCGCU-------AG-CUCUAGC-GCaa--GAGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 5494 0.66 0.978802
Target:  5'- uGGCGcgCGuccgcgccgGGGUCGCGaggUCcCGGACc -3'
miRNA:   3'- uCCGCuaGC---------UCUAGCGCa--AGaGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 105231 0.66 0.978802
Target:  5'- cGGUGAgggUGAcGAUCaGCGgccucUUCUCGGGCc -3'
miRNA:   3'- uCCGCUa--GCU-CUAG-CGC-----AAGAGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 22409 0.66 0.976494
Target:  5'- cGGGCGc-CGAGAcgaGCGa-CUCGGACg -3'
miRNA:   3'- -UCCGCuaGCUCUag-CGCaaGAGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 33643 0.66 0.974006
Target:  5'- gAGGCGcgCGcGggCGCGg---CGGACa -3'
miRNA:   3'- -UCCGCuaGCuCuaGCGCaagaGCCUG- -5'
9038 3' -54.5 NC_002512.2 + 108335 0.66 0.974006
Target:  5'- cGGGCGGUCGg---CGCGgcaugcgCGGACg -3'
miRNA:   3'- -UCCGCUAGCucuaGCGCaaga---GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.