Results 1 - 20 of 659 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9038 | 5' | -61 | NC_002512.2 | + | 77099 | 0.66 | 0.851247 |
Target: 5'- gGACcuCCGAG-ACgGaGGCCCGGCGg -3' miRNA: 3'- gCUGc-GGCUCaUGgCgCUGGGCCGCg -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 38043 | 0.66 | 0.851247 |
Target: 5'- gGACGCCgGAGgggugggagGgCGCaagGACCCcGCGCg -3' miRNA: 3'- gCUGCGG-CUCa--------UgGCG---CUGGGcCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 82121 | 0.66 | 0.851247 |
Target: 5'- gCGA-GUCGGGacgGCCGCG--CUGGCGCa -3' miRNA: 3'- -GCUgCGGCUCa--UGGCGCugGGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 130602 | 0.66 | 0.851247 |
Target: 5'- gGAgGCgGAGgagaCGaagaGCCCGGCGCg -3' miRNA: 3'- gCUgCGgCUCaug-GCgc--UGGGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 98534 | 0.66 | 0.851247 |
Target: 5'- -cGCGCCGGcugggACCuCG-CCCGGCGUu -3' miRNA: 3'- gcUGCGGCUca---UGGcGCuGGGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 6644 | 0.66 | 0.851247 |
Target: 5'- gGACGCCcgagGAGUcgaagugcACCGagcCGGCCgGGaCGCg -3' miRNA: 3'- gCUGCGG----CUCA--------UGGC---GCUGGgCC-GCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 98676 | 0.66 | 0.851247 |
Target: 5'- gCGACGUCGAGcgccugGCCGCgcacGACUacGCGCu -3' miRNA: 3'- -GCUGCGGCUCa-----UGGCG----CUGGgcCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 110654 | 0.66 | 0.851247 |
Target: 5'- aGcCGCCGcucgACCGCGGgcagccgguCCUGGUGCu -3' miRNA: 3'- gCuGCGGCuca-UGGCGCU---------GGGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 147907 | 0.66 | 0.851247 |
Target: 5'- aGACGCCccc-GCCGCcaccacccGCCCGGgGCu -3' miRNA: 3'- gCUGCGGcucaUGGCGc-------UGGGCCgCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 133340 | 0.66 | 0.851247 |
Target: 5'- uGGCGuCCGGGauccccgGCCcCGGCucacaccgCCGGCGCg -3' miRNA: 3'- gCUGC-GGCUCa------UGGcGCUG--------GGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 133993 | 0.66 | 0.851247 |
Target: 5'- uCGGCacccgGCCGGGcgACCuCGAgaucCUCGGCGCg -3' miRNA: 3'- -GCUG-----CGGCUCa-UGGcGCU----GGGCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 219598 | 0.66 | 0.851247 |
Target: 5'- gGugGCCGAc--UCGCuGCCCGGCu- -3' miRNA: 3'- gCugCGGCUcauGGCGcUGGGCCGcg -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 15453 | 0.66 | 0.851247 |
Target: 5'- cCGACGUagaCGGGga-CGCGGuCCUcgGGCGCg -3' miRNA: 3'- -GCUGCG---GCUCaugGCGCU-GGG--CCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 40300 | 0.66 | 0.851247 |
Target: 5'- aCGuCGucCCGAGgACCcgGCGGCCCGGUcggaaGCa -3' miRNA: 3'- -GCuGC--GGCUCaUGG--CGCUGGGCCG-----CG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 74797 | 0.66 | 0.851247 |
Target: 5'- uCGACuGCUGAcgcCCGgGcACCCGGCaGCg -3' miRNA: 3'- -GCUG-CGGCUcauGGCgC-UGGGCCG-CG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 96542 | 0.66 | 0.851247 |
Target: 5'- uGA-GCCGGG-GCCGgGGauCCCGGaCGCc -3' miRNA: 3'- gCUgCGGCUCaUGGCgCU--GGGCC-GCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 75341 | 0.66 | 0.851247 |
Target: 5'- uGGCGaCCGAGgcggagGCgGCGGaCCGGUaGCg -3' miRNA: 3'- gCUGC-GGCUCa-----UGgCGCUgGGCCG-CG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 7473 | 0.66 | 0.851247 |
Target: 5'- gCGGCuGCCGGcccccGCCGaaGCCgCGGCGCu -3' miRNA: 3'- -GCUG-CGGCUca---UGGCgcUGG-GCCGCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 139497 | 0.66 | 0.850518 |
Target: 5'- cCGGCGCCGGcaagaccucgagcGUGCa--GACCCuGGcCGCg -3' miRNA: 3'- -GCUGCGGCU-------------CAUGgcgCUGGG-CC-GCG- -5' |
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9038 | 5' | -61 | NC_002512.2 | + | 95537 | 0.66 | 0.850518 |
Target: 5'- gGACGgugCGGGUcuggagcucgGCCGCGGCgaguccgUCGGCGCc -3' miRNA: 3'- gCUGCg--GCUCA----------UGGCGCUG-------GGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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