miRNA display CGI


Results 1 - 20 of 659 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9038 5' -61 NC_002512.2 + 98676 0.66 0.851247
Target:  5'- gCGACGUCGAGcgccugGCCGCgcacGACUacGCGCu -3'
miRNA:   3'- -GCUGCGGCUCa-----UGGCG----CUGGgcCGCG- -5'
9038 5' -61 NC_002512.2 + 82121 0.66 0.851247
Target:  5'- gCGA-GUCGGGacgGCCGCG--CUGGCGCa -3'
miRNA:   3'- -GCUgCGGCUCa--UGGCGCugGGCCGCG- -5'
9038 5' -61 NC_002512.2 + 133993 0.66 0.851247
Target:  5'- uCGGCacccgGCCGGGcgACCuCGAgaucCUCGGCGCg -3'
miRNA:   3'- -GCUG-----CGGCUCa-UGGcGCU----GGGCCGCG- -5'
9038 5' -61 NC_002512.2 + 6644 0.66 0.851247
Target:  5'- gGACGCCcgagGAGUcgaagugcACCGagcCGGCCgGGaCGCg -3'
miRNA:   3'- gCUGCGG----CUCA--------UGGC---GCUGGgCC-GCG- -5'
9038 5' -61 NC_002512.2 + 98534 0.66 0.851247
Target:  5'- -cGCGCCGGcugggACCuCG-CCCGGCGUu -3'
miRNA:   3'- gcUGCGGCUca---UGGcGCuGGGCCGCG- -5'
9038 5' -61 NC_002512.2 + 74797 0.66 0.851247
Target:  5'- uCGACuGCUGAcgcCCGgGcACCCGGCaGCg -3'
miRNA:   3'- -GCUG-CGGCUcauGGCgC-UGGGCCG-CG- -5'
9038 5' -61 NC_002512.2 + 7473 0.66 0.851247
Target:  5'- gCGGCuGCCGGcccccGCCGaaGCCgCGGCGCu -3'
miRNA:   3'- -GCUG-CGGCUca---UGGCgcUGG-GCCGCG- -5'
9038 5' -61 NC_002512.2 + 75341 0.66 0.851247
Target:  5'- uGGCGaCCGAGgcggagGCgGCGGaCCGGUaGCg -3'
miRNA:   3'- gCUGC-GGCUCa-----UGgCGCUgGGCCG-CG- -5'
9038 5' -61 NC_002512.2 + 219598 0.66 0.851247
Target:  5'- gGugGCCGAc--UCGCuGCCCGGCu- -3'
miRNA:   3'- gCugCGGCUcauGGCGcUGGGCCGcg -5'
9038 5' -61 NC_002512.2 + 96542 0.66 0.851247
Target:  5'- uGA-GCCGGG-GCCGgGGauCCCGGaCGCc -3'
miRNA:   3'- gCUgCGGCUCaUGGCgCU--GGGCC-GCG- -5'
9038 5' -61 NC_002512.2 + 130602 0.66 0.851247
Target:  5'- gGAgGCgGAGgagaCGaagaGCCCGGCGCg -3'
miRNA:   3'- gCUgCGgCUCaug-GCgc--UGGGCCGCG- -5'
9038 5' -61 NC_002512.2 + 110654 0.66 0.851247
Target:  5'- aGcCGCCGcucgACCGCGGgcagccgguCCUGGUGCu -3'
miRNA:   3'- gCuGCGGCuca-UGGCGCU---------GGGCCGCG- -5'
9038 5' -61 NC_002512.2 + 77099 0.66 0.851247
Target:  5'- gGACcuCCGAG-ACgGaGGCCCGGCGg -3'
miRNA:   3'- gCUGc-GGCUCaUGgCgCUGGGCCGCg -5'
9038 5' -61 NC_002512.2 + 133340 0.66 0.851247
Target:  5'- uGGCGuCCGGGauccccgGCCcCGGCucacaccgCCGGCGCg -3'
miRNA:   3'- gCUGC-GGCUCa------UGGcGCUG--------GGCCGCG- -5'
9038 5' -61 NC_002512.2 + 40300 0.66 0.851247
Target:  5'- aCGuCGucCCGAGgACCcgGCGGCCCGGUcggaaGCa -3'
miRNA:   3'- -GCuGC--GGCUCaUGG--CGCUGGGCCG-----CG- -5'
9038 5' -61 NC_002512.2 + 15453 0.66 0.851247
Target:  5'- cCGACGUagaCGGGga-CGCGGuCCUcgGGCGCg -3'
miRNA:   3'- -GCUGCG---GCUCaugGCGCU-GGG--CCGCG- -5'
9038 5' -61 NC_002512.2 + 147907 0.66 0.851247
Target:  5'- aGACGCCccc-GCCGCcaccacccGCCCGGgGCu -3'
miRNA:   3'- gCUGCGGcucaUGGCGc-------UGGGCCgCG- -5'
9038 5' -61 NC_002512.2 + 38043 0.66 0.851247
Target:  5'- gGACGCCgGAGgggugggagGgCGCaagGACCCcGCGCg -3'
miRNA:   3'- gCUGCGG-CUCa--------UgGCG---CUGGGcCGCG- -5'
9038 5' -61 NC_002512.2 + 95537 0.66 0.850518
Target:  5'- gGACGgugCGGGUcuggagcucgGCCGCGGCgaguccgUCGGCGCc -3'
miRNA:   3'- gCUGCg--GCUCA----------UGGCGCUG-------GGCCGCG- -5'
9038 5' -61 NC_002512.2 + 139497 0.66 0.850518
Target:  5'- cCGGCGCCGGcaagaccucgagcGUGCa--GACCCuGGcCGCg -3'
miRNA:   3'- -GCUGCGGCU-------------CAUGgcgCUGGG-CC-GCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.