miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9043 3' -52.7 NC_002512.2 + 93311 0.66 0.994781
Target:  5'- -cAACCCGCGCaccgggcuGACCCGgaucauccGCAaGAGCu -3'
miRNA:   3'- acUUGGGCGUG--------CUGGGCa-------UGUaCUUG- -5'
9043 3' -52.7 NC_002512.2 + 81730 0.66 0.994781
Target:  5'- gGAGCUgcaGCACGuagUCCGUGuuCAUGAGCu -3'
miRNA:   3'- aCUUGGg--CGUGCu--GGGCAU--GUACUUG- -5'
9043 3' -52.7 NC_002512.2 + 137242 0.66 0.994781
Target:  5'- cGGAUCCGCGCGGguCCCG-GCGccGGCg -3'
miRNA:   3'- aCUUGGGCGUGCU--GGGCaUGUacUUG- -5'
9043 3' -52.7 NC_002512.2 + 103238 0.66 0.994781
Target:  5'- --cGCCCGUcgACGGCCgCGgcgaggGCAUGGAg -3'
miRNA:   3'- acuUGGGCG--UGCUGG-GCa-----UGUACUUg -5'
9043 3' -52.7 NC_002512.2 + 224384 0.66 0.994781
Target:  5'- gGGACCU-CGCGACCCcgGCGcGGACg -3'
miRNA:   3'- aCUUGGGcGUGCUGGGcaUGUaCUUG- -5'
9043 3' -52.7 NC_002512.2 + 51036 0.66 0.994781
Target:  5'- cGGACCaCGCgcacgugugccuGCGACCCGaGCAcguccGGGCg -3'
miRNA:   3'- aCUUGG-GCG------------UGCUGGGCaUGUa----CUUG- -5'
9043 3' -52.7 NC_002512.2 + 16892 0.66 0.994781
Target:  5'- cGGGCCCG-ACGGCCgCGgcgACgAUGAGg -3'
miRNA:   3'- aCUUGGGCgUGCUGG-GCa--UG-UACUUg -5'
9043 3' -52.7 NC_002512.2 + 55247 0.66 0.994781
Target:  5'- aGAACgugCCGgACGACCCGgacuucaacaGCGUGAu- -3'
miRNA:   3'- aCUUG---GGCgUGCUGGGCa---------UGUACUug -5'
9043 3' -52.7 NC_002512.2 + 8846 0.66 0.994781
Target:  5'- cGGGCUCGCugccggGCGGcacCCCGUugGUGGccGCg -3'
miRNA:   3'- aCUUGGGCG------UGCU---GGGCAugUACU--UG- -5'
9043 3' -52.7 NC_002512.2 + 177022 0.66 0.994781
Target:  5'- gGGccGCCUGCGCGuCCCGccAguUGAGCc -3'
miRNA:   3'- aCU--UGGGCGUGCuGGGCa-UguACUUG- -5'
9043 3' -52.7 NC_002512.2 + 186519 0.66 0.994781
Target:  5'- cGGGCCaGCGuCGACCUcUGCGUGcACg -3'
miRNA:   3'- aCUUGGgCGU-GCUGGGcAUGUACuUG- -5'
9043 3' -52.7 NC_002512.2 + 156667 0.66 0.994781
Target:  5'- --cGCCCGCgACGACgCGUACGg---- -3'
miRNA:   3'- acuUGGGCG-UGCUGgGCAUGUacuug -5'
9043 3' -52.7 NC_002512.2 + 44389 0.66 0.993976
Target:  5'- ---cCCCGCGCaGCCCG-GCGUGcGCc -3'
miRNA:   3'- acuuGGGCGUGcUGGGCaUGUACuUG- -5'
9043 3' -52.7 NC_002512.2 + 34585 0.66 0.993976
Target:  5'- cUGAGCUCGCGCccuucggcgccGGCCCccGCGggGAACg -3'
miRNA:   3'- -ACUUGGGCGUG-----------CUGGGcaUGUa-CUUG- -5'
9043 3' -52.7 NC_002512.2 + 74811 0.66 0.993976
Target:  5'- cGGACCCcgaacguCACGAcCCCGcGCGcGAACg -3'
miRNA:   3'- aCUUGGGc------GUGCU-GGGCaUGUaCUUG- -5'
9043 3' -52.7 NC_002512.2 + 41141 0.66 0.993976
Target:  5'- -cAACuCCGCACgGGCCCGgAUAcGGACa -3'
miRNA:   3'- acUUG-GGCGUG-CUGGGCaUGUaCUUG- -5'
9043 3' -52.7 NC_002512.2 + 138946 0.66 0.993976
Target:  5'- cGcGCCCacGCACGccccggucgcGCCCGUcaGCAUGGAg -3'
miRNA:   3'- aCuUGGG--CGUGC----------UGGGCA--UGUACUUg -5'
9043 3' -52.7 NC_002512.2 + 120226 0.66 0.993976
Target:  5'- aUGAuCUCGUccaugaACGAgCCCG-GCAUGAACa -3'
miRNA:   3'- -ACUuGGGCG------UGCU-GGGCaUGUACUUG- -5'
9043 3' -52.7 NC_002512.2 + 94793 0.66 0.993976
Target:  5'- aGGGCgCGCACGACgCGgagacGCGggggGAGCc -3'
miRNA:   3'- aCUUGgGCGUGCUGgGCa----UGUa---CUUG- -5'
9043 3' -52.7 NC_002512.2 + 223855 0.66 0.993075
Target:  5'- aGAGgCCGguUGuuCCCGUGCgcgacuGUGAACa -3'
miRNA:   3'- aCUUgGGCguGCu-GGGCAUG------UACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.