miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9043 5' -51 NC_002512.2 + 228153 0.66 0.9985
Target:  5'- -aGCUCAGGUccACGCGG-----AGCCGg -3'
miRNA:   3'- gaCGAGUUCA--UGCGCCacaagUUGGC- -5'
9043 5' -51 NC_002512.2 + 146857 0.66 0.9985
Target:  5'- gUGCUCGAGcucGCGCGG-GgcCAcuACCGc -3'
miRNA:   3'- gACGAGUUCa--UGCGCCaCaaGU--UGGC- -5'
9043 5' -51 NC_002512.2 + 221450 0.66 0.9985
Target:  5'- -gGC-CGGG-GCGCGGUcGUcCGACCGg -3'
miRNA:   3'- gaCGaGUUCaUGCGCCA-CAaGUUGGC- -5'
9043 5' -51 NC_002512.2 + 212204 0.66 0.998328
Target:  5'- gCUGCUCGacgaggagaucgucgGcGUGCGCGGggacgacaUGUUC-GCCGg -3'
miRNA:   3'- -GACGAGU---------------U-CAUGCGCC--------ACAAGuUGGC- -5'
9043 5' -51 NC_002512.2 + 99914 0.66 0.998205
Target:  5'- -cGCUCccg---GCGGUGUUCGAUCGc -3'
miRNA:   3'- gaCGAGuucaugCGCCACAAGUUGGC- -5'
9043 5' -51 NC_002512.2 + 22943 0.66 0.998205
Target:  5'- -cGCUgAAGggcacGCgGCGGUGUgcCAGCCGu -3'
miRNA:   3'- gaCGAgUUCa----UG-CGCCACAa-GUUGGC- -5'
9043 5' -51 NC_002512.2 + 130528 0.66 0.997863
Target:  5'- -aGCUCGGGU-CGCGGgaacauGCCGg -3'
miRNA:   3'- gaCGAGUUCAuGCGCCacaaguUGGC- -5'
9043 5' -51 NC_002512.2 + 73396 0.66 0.997467
Target:  5'- gCUGCUCGAGaACGUGGcUGUcuaCGACa- -3'
miRNA:   3'- -GACGAGUUCaUGCGCC-ACAa--GUUGgc -5'
9043 5' -51 NC_002512.2 + 42047 0.67 0.996493
Target:  5'- uCUGCUCAugauuGU-CGCGGauggUGUUCAgaGCCc -3'
miRNA:   3'- -GACGAGUu----CAuGCGCC----ACAAGU--UGGc -5'
9043 5' -51 NC_002512.2 + 105334 0.67 0.996493
Target:  5'- -gGC-CGAGUAgGCGGUGUcgauGACCa -3'
miRNA:   3'- gaCGaGUUCAUgCGCCACAag--UUGGc -5'
9043 5' -51 NC_002512.2 + 137533 0.67 0.995901
Target:  5'- gCUGCUCGcGUcCGCGGcgacggGUUCggUCGc -3'
miRNA:   3'- -GACGAGUuCAuGCGCCa-----CAAGuuGGC- -5'
9043 5' -51 NC_002512.2 + 133879 0.67 0.995901
Target:  5'- -gGCUCGAGga-GCGGc--UCGGCCGg -3'
miRNA:   3'- gaCGAGUUCaugCGCCacaAGUUGGC- -5'
9043 5' -51 NC_002512.2 + 62793 0.67 0.995509
Target:  5'- -cGCUCcauGUACGCGGagguggccagcagcaUGUcgCGGCCGa -3'
miRNA:   3'- gaCGAGuu-CAUGCGCC---------------ACAa-GUUGGC- -5'
9043 5' -51 NC_002512.2 + 227884 0.67 0.99523
Target:  5'- -gGCUCAGGcgACGCGGgcgagUCcgaGGCCGg -3'
miRNA:   3'- gaCGAGUUCa-UGCGCCaca--AG---UUGGC- -5'
9043 5' -51 NC_002512.2 + 104474 0.67 0.99523
Target:  5'- gUGCUCAAGgAgGUGGaGUUCcgcuGCCGa -3'
miRNA:   3'- gACGAGUUCaUgCGCCaCAAGu---UGGC- -5'
9043 5' -51 NC_002512.2 + 140965 0.67 0.994472
Target:  5'- -gGCUCGGucGCGUGGUGacCGAUCGg -3'
miRNA:   3'- gaCGAGUUcaUGCGCCACaaGUUGGC- -5'
9043 5' -51 NC_002512.2 + 211244 0.67 0.994472
Target:  5'- aCUGCgUCGAGgcggccgucgACGCcaUGUUCGACCGc -3'
miRNA:   3'- -GACG-AGUUCa---------UGCGccACAAGUUGGC- -5'
9043 5' -51 NC_002512.2 + 204751 0.67 0.994391
Target:  5'- gUGCUCAgcgaucccggccuGGgGCGCGG-GgaCGACCGg -3'
miRNA:   3'- gACGAGU-------------UCaUGCGCCaCaaGUUGGC- -5'
9043 5' -51 NC_002512.2 + 207618 0.68 0.993619
Target:  5'- gCUGCggcggCGAGUuccucgGCGUGGUGUUuccguuccggCGGCCGu -3'
miRNA:   3'- -GACGa----GUUCA------UGCGCCACAA----------GUUGGC- -5'
9043 5' -51 NC_002512.2 + 94710 0.68 0.991599
Target:  5'- -aGCUCGcGGUGCGCGGggcgcaggcGUUCGcugGCCa -3'
miRNA:   3'- gaCGAGU-UCAUGCGCCa--------CAAGU---UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.