miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9044 3' -56 NC_002512.2 + 179823 0.66 0.961202
Target:  5'- uAGGUcgGUccccUCuCCGUCAGCAccagcccccgcguguGCGCGCCc -3'
miRNA:   3'- -UCCA--CA----AGcGGUAGUCGU---------------UGCGCGGc -5'
9044 3' -56 NC_002512.2 + 216252 0.66 0.959816
Target:  5'- cGG---UCGUCAUCAGguGCGcCGCCc -3'
miRNA:   3'- uCCacaAGCGGUAGUCguUGC-GCGGc -5'
9044 3' -56 NC_002512.2 + 108310 0.66 0.959816
Target:  5'- cGGUGUgguCCAU-GGCGGCGCGCgGc -3'
miRNA:   3'- uCCACAagcGGUAgUCGUUGCGCGgC- -5'
9044 3' -56 NC_002512.2 + 201924 0.66 0.956204
Target:  5'- cGGc---CGcCCAUCGGCGACGgGCCc -3'
miRNA:   3'- uCCacaaGC-GGUAGUCGUUGCgCGGc -5'
9044 3' -56 NC_002512.2 + 209153 0.66 0.956204
Target:  5'- cGGcgagcacgUCGUCGUCGGCAcgGCGCGCa- -3'
miRNA:   3'- uCCaca-----AGCGGUAGUCGU--UGCGCGgc -5'
9044 3' -56 NC_002512.2 + 221716 0.66 0.956204
Target:  5'- cGGGUGcuaCGCCGagaUCcccgagcgccuGGCgGACGCGCCGu -3'
miRNA:   3'- -UCCACaa-GCGGU---AG-----------UCG-UUGCGCGGC- -5'
9044 3' -56 NC_002512.2 + 18501 0.66 0.956204
Target:  5'- cGGUug-CGCCucuucuuccgCAGCAugcCGCGCCGg -3'
miRNA:   3'- uCCAcaaGCGGua--------GUCGUu--GCGCGGC- -5'
9044 3' -56 NC_002512.2 + 82036 0.66 0.956204
Target:  5'- gGGGUcg-CGCCggCGGCGGuCGCGgCGg -3'
miRNA:   3'- -UCCAcaaGCGGuaGUCGUU-GCGCgGC- -5'
9044 3' -56 NC_002512.2 + 89525 0.66 0.956204
Target:  5'- cGGUGUUCGaguguUCGGUGACgGCGCUc -3'
miRNA:   3'- uCCACAAGCggu--AGUCGUUG-CGCGGc -5'
9044 3' -56 NC_002512.2 + 146103 0.66 0.952377
Target:  5'- cGGUccUCGgCggCGGCGGCGgCGCCGu -3'
miRNA:   3'- uCCAcaAGCgGuaGUCGUUGC-GCGGC- -5'
9044 3' -56 NC_002512.2 + 208712 0.66 0.952377
Target:  5'- cGGG-GcUCGCCGaccagaUCGGgAGCGCcGCCGa -3'
miRNA:   3'- -UCCaCaAGCGGU------AGUCgUUGCG-CGGC- -5'
9044 3' -56 NC_002512.2 + 224323 0.66 0.952377
Target:  5'- -cGUG-UCGUCGUCuguuuuuccgcGGCGcCGCGCCGg -3'
miRNA:   3'- ucCACaAGCGGUAG-----------UCGUuGCGCGGC- -5'
9044 3' -56 NC_002512.2 + 44190 0.66 0.952377
Target:  5'- cGGUGgUCGCg--CAGCGAgGCGCa- -3'
miRNA:   3'- uCCACaAGCGguaGUCGUUgCGCGgc -5'
9044 3' -56 NC_002512.2 + 112369 0.66 0.952377
Target:  5'- aAGGUGUccguccucacCGCCGUCAGCGcgaacccgggAUGCaGCCc -3'
miRNA:   3'- -UCCACAa---------GCGGUAGUCGU----------UGCG-CGGc -5'
9044 3' -56 NC_002512.2 + 197806 0.66 0.952377
Target:  5'- cGGgc--CGCCAUCGGCGACccccccUGCCGg -3'
miRNA:   3'- uCCacaaGCGGUAGUCGUUGc-----GCGGC- -5'
9044 3' -56 NC_002512.2 + 169748 0.66 0.949976
Target:  5'- aAGGUGUUcugcuccgagcaCGCCAUCAGCucgcagAGCaggcacaccgucgucGUGCCGu -3'
miRNA:   3'- -UCCACAA------------GCGGUAGUCG------UUG---------------CGCGGC- -5'
9044 3' -56 NC_002512.2 + 107351 0.66 0.948331
Target:  5'- cGGcGa--GCCugaugucCAGCGGCGCGCCGg -3'
miRNA:   3'- uCCaCaagCGGua-----GUCGUUGCGCGGC- -5'
9044 3' -56 NC_002512.2 + 137148 0.66 0.948331
Target:  5'- ---cGUcggCGCCAUCGGaccgAGCGCGCCc -3'
miRNA:   3'- uccaCAa--GCGGUAGUCg---UUGCGCGGc -5'
9044 3' -56 NC_002512.2 + 108689 0.66 0.948331
Target:  5'- gAGGg---CGCUGUCGGcCAGCGC-CCGg -3'
miRNA:   3'- -UCCacaaGCGGUAGUC-GUUGCGcGGC- -5'
9044 3' -56 NC_002512.2 + 62808 0.66 0.948331
Target:  5'- gAGGUG---GCCAgCAGCAuguCGCgGCCGa -3'
miRNA:   3'- -UCCACaagCGGUaGUCGUu--GCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.