miRNA display CGI


Results 1 - 20 of 582 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9044 5' -61.9 NC_002512.2 + 98144 0.66 0.804653
Target:  5'- cGCGGCcGCCCgccCCGGCGGuCGCCg -3'
miRNA:   3'- cCGCUGcCGGGaccGGCUGCUcGUGG- -5'
9044 5' -61.9 NC_002512.2 + 223532 0.66 0.804653
Target:  5'- cGGC-ACGcGCCCgcGGCCcGCGGccccGCGCCc -3'
miRNA:   3'- -CCGcUGC-CGGGa-CCGGcUGCU----CGUGG- -5'
9044 5' -61.9 NC_002512.2 + 105122 0.66 0.804653
Target:  5'- uGCG-CGGUCgucugGGCCGACGAcgGCuCCa -3'
miRNA:   3'- cCGCuGCCGGga---CCGGCUGCU--CGuGG- -5'
9044 5' -61.9 NC_002512.2 + 36225 0.66 0.804653
Target:  5'- cGGaGACGGuCCCgaGGacgaCGGCGAGUAgCg -3'
miRNA:   3'- -CCgCUGCC-GGGa-CCg---GCUGCUCGUgG- -5'
9044 5' -61.9 NC_002512.2 + 122677 0.66 0.804653
Target:  5'- aGGUGACGGCgaggGGCCcgGGCGAGUuCa -3'
miRNA:   3'- -CCGCUGCCGgga-CCGG--CUGCUCGuGg -5'
9044 5' -61.9 NC_002512.2 + 47974 0.66 0.804653
Target:  5'- aGGCcGCGGaccacaucucguUCCUGGCCuacaACGcGCACCu -3'
miRNA:   3'- -CCGcUGCC------------GGGACCGGc---UGCuCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 96726 0.66 0.804653
Target:  5'- cGCGGgcCGGCCCgcgGGaaCCGgACGAGCGa- -3'
miRNA:   3'- cCGCU--GCCGGGa--CC--GGC-UGCUCGUgg -5'
9044 5' -61.9 NC_002512.2 + 95138 0.66 0.804653
Target:  5'- --gGACGGUCCgccccGGCgGGuCGAGgACCg -3'
miRNA:   3'- ccgCUGCCGGGa----CCGgCU-GCUCgUGG- -5'
9044 5' -61.9 NC_002512.2 + 126775 0.66 0.804653
Target:  5'- cGGCGGCGGC---GG-CGACGcGUGCCg -3'
miRNA:   3'- -CCGCUGCCGggaCCgGCUGCuCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 110289 0.66 0.804653
Target:  5'- cGGCGAgGGCgacacugCUGGCgCGAgGGGaccCGCCg -3'
miRNA:   3'- -CCGCUgCCGg------GACCG-GCUgCUC---GUGG- -5'
9044 5' -61.9 NC_002512.2 + 147453 0.66 0.804653
Target:  5'- -aCGGCGGCCgucugucgcugCUGGUCuucgcGCGGGCGCUg -3'
miRNA:   3'- ccGCUGCCGG-----------GACCGGc----UGCUCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 121659 0.66 0.804653
Target:  5'- cGCGGCGuCCCUGuuugaucacgucGCCGcCGAGUGCa -3'
miRNA:   3'- cCGCUGCcGGGAC------------CGGCuGCUCGUGg -5'
9044 5' -61.9 NC_002512.2 + 172459 0.66 0.804653
Target:  5'- -uCGAC-GCCCUGGUCGACaacGuCACCu -3'
miRNA:   3'- ccGCUGcCGGGACCGGCUGcu-C-GUGG- -5'
9044 5' -61.9 NC_002512.2 + 131089 0.66 0.804653
Target:  5'- cGGcCGcCGGgguaCCUGGaCGugGuGCGCCg -3'
miRNA:   3'- -CC-GCuGCCg---GGACCgGCugCuCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 136077 0.66 0.804653
Target:  5'- gGGUGGCGGCguuCCUGcugcugcucgcGCUGGCG-GCgGCCa -3'
miRNA:   3'- -CCGCUGCCG---GGAC-----------CGGCUGCuCG-UGG- -5'
9044 5' -61.9 NC_002512.2 + 209263 0.66 0.803832
Target:  5'- cGGCGAacCGGaCCUccuucgaGGaCGugGAGCGCUg -3'
miRNA:   3'- -CCGCU--GCCgGGA-------CCgGCugCUCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 58145 0.66 0.799707
Target:  5'- gGGCGAgGGCCCcGaGCuCGACGucccgaucguucucGCuACCg -3'
miRNA:   3'- -CCGCUgCCGGGaC-CG-GCUGCu-------------CG-UGG- -5'
9044 5' -61.9 NC_002512.2 + 126477 0.66 0.797216
Target:  5'- cGGCGucuucgacgaguucgUGGCCCcGGagCG-CGAGCGCCu -3'
miRNA:   3'- -CCGCu--------------GCCGGGaCCg-GCuGCUCGUGG- -5'
9044 5' -61.9 NC_002512.2 + 64639 0.66 0.796383
Target:  5'- cGCGACGcGUCCgcgaGGUCGugGAuCACg -3'
miRNA:   3'- cCGCUGC-CGGGa---CCGGCugCUcGUGg -5'
9044 5' -61.9 NC_002512.2 + 120806 0.66 0.796383
Target:  5'- cGGCGGCGGucucucggaCCCgGGaCgCGGCGGGU-CCg -3'
miRNA:   3'- -CCGCUGCC---------GGGaCC-G-GCUGCUCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.