miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 212443 0.66 0.981418
Target:  5'- -gGCCGGccGGCCGCGaCCGccGCgaGGAGGg -3'
miRNA:   3'- uaUGGCCu-UUGGUGC-GGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 209875 0.66 0.983383
Target:  5'- -cGCCGGcuACUACGUgGUcggucgcggggaGCAGGGGc -3'
miRNA:   3'- uaUGGCCuuUGGUGCGgUA------------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 207431 0.7 0.892442
Target:  5'- cUGCaCGGAGAUCugGCCGUaguagcccaGCGGAuGGg -3'
miRNA:   3'- uAUG-GCCUUUGGugCGGUA---------CGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 206562 0.67 0.971793
Target:  5'- -cGCCGGcgGCCcgggGCGCCAgaacUGCAGGu- -3'
miRNA:   3'- uaUGGCCuuUGG----UGCGGU----ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 204646 0.66 0.986838
Target:  5'- -gACCGGGAcgGCgACGC---GCGGGGGa -3'
miRNA:   3'- uaUGGCCUU--UGgUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 204351 0.66 0.988343
Target:  5'- uGUGCCGcGucGCCuACGCCAUGagcaAGGGc -3'
miRNA:   3'- -UAUGGC-CuuUGG-UGCGGUACg---UCUCc -5'
9045 5' -53.6 NC_002512.2 + 201710 0.66 0.979284
Target:  5'- -gAUCGGcgGCgGCGUCGUcgucGCGGGGGg -3'
miRNA:   3'- uaUGGCCuuUGgUGCGGUA----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 196632 0.71 0.87873
Target:  5'- --cCCGGGuGGCCgACGCCGUGUgucuGGGGGg -3'
miRNA:   3'- uauGGCCU-UUGG-UGCGGUACG----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 194029 0.67 0.965822
Target:  5'- -gACCGGGAGucggcgauCCAgGCCGccuggcUGguGAGGg -3'
miRNA:   3'- uaUGGCCUUU--------GGUgCGGU------ACguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 192091 0.71 0.86415
Target:  5'- -cACaCGGAAcCCugGCCAauccuuucccgGCAGAGGa -3'
miRNA:   3'- uaUG-GCCUUuGGugCGGUa----------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 182429 0.66 0.979284
Target:  5'- cUugCGGAAcucggccucgGCCucCGCCGUGCGGGcguGGu -3'
miRNA:   3'- uAugGCCUU----------UGGu-GCGGUACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 175575 0.69 0.922727
Target:  5'- uGUACCGGcgggucACCAcguCGCCGUGCGGGu- -3'
miRNA:   3'- -UAUGGCCuu----UGGU---GCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 174400 0.68 0.959012
Target:  5'- -cACCGuaAAACCACGCCucucccauauuGUGUAGAGa -3'
miRNA:   3'- uaUGGCc-UUUGGUGCGG-----------UACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 174334 0.66 0.986679
Target:  5'- -gGCgGGGGuccGCCGCGCCcucguccgccgggAUGCGGAuGGc -3'
miRNA:   3'- uaUGgCCUU---UGGUGCGG-------------UACGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 166448 0.67 0.976974
Target:  5'- --uCCGGGggcGACgGCGCCggGCucGAGGg -3'
miRNA:   3'- uauGGCCU---UUGgUGCGGuaCGu-CUCC- -5'
9045 5' -53.6 NC_002512.2 + 164439 0.72 0.832562
Target:  5'- -cGCCgGGAAGCCgcucgGCGCCcucgGCGGGGGc -3'
miRNA:   3'- uaUGG-CCUUUGG-----UGCGGua--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 164223 0.66 0.979061
Target:  5'- -cGCCGGGAagggcAUCggcaugguguucgGCGCCGUGgCGGGGGc -3'
miRNA:   3'- uaUGGCCUU-----UGG-------------UGCGGUAC-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 162531 0.69 0.916564
Target:  5'- cUACUGGGGACCACcgugaaccgacugGCUAUGCcguguGGGGa -3'
miRNA:   3'- uAUGGCCUUUGGUG-------------CGGUACGu----CUCC- -5'
9045 5' -53.6 NC_002512.2 + 162130 0.68 0.962524
Target:  5'- -cGCCGGAGACgAC-CCcgGCucgcGAGGc -3'
miRNA:   3'- uaUGGCCUUUGgUGcGGuaCGu---CUCC- -5'
9045 5' -53.6 NC_002512.2 + 159011 0.66 0.983383
Target:  5'- --cCCGGcguCCGCGCCggGCGGAc- -3'
miRNA:   3'- uauGGCCuuuGGUGCGGuaCGUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.