miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 34887 0.7 0.905252
Target:  5'- -cGCCGGGAccGCCGuCGCCcucuUGCgccgAGAGGa -3'
miRNA:   3'- uaUGGCCUU--UGGU-GCGGu---ACG----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 2074 0.7 0.885697
Target:  5'- -aGCgCGGAGuCCACGCCggGCGGGagcGGg -3'
miRNA:   3'- uaUG-GCCUUuGGUGCGGuaCGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 48729 0.7 0.911311
Target:  5'- cUGCUGGAgGACCugGCC--GCGGAGu -3'
miRNA:   3'- uAUGGCCU-UUGGugCGGuaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 133796 0.7 0.911311
Target:  5'- -cGgCGGGGACgacgguCGCGCCGggUGCGGGGGg -3'
miRNA:   3'- uaUgGCCUUUG------GUGCGGU--ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 109562 0.69 0.92808
Target:  5'- -gACCGGAucUC-CGCCGUGCAGuagcGGc -3'
miRNA:   3'- uaUGGCCUuuGGuGCGGUACGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 158979 0.69 0.942727
Target:  5'- --uUCGGcgGCCACGgCGggGCGGAGGc -3'
miRNA:   3'- uauGGCCuuUGGUGCgGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 47430 0.69 0.922727
Target:  5'- cUGCCacGAGcACCACGCCcgcacgGCGGAGGc -3'
miRNA:   3'- uAUGGc-CUU-UGGUGCGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 25943 0.69 0.922727
Target:  5'- -gGCCGGggGCCACgaggGCCucguaguaGCGGAGc -3'
miRNA:   3'- uaUGGCCuuUGGUG----CGGua------CGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 34970 0.69 0.92808
Target:  5'- -gACCGGGuccggcugGGCCucGCGUCccGCGGAGGa -3'
miRNA:   3'- uaUGGCCU--------UUGG--UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 58337 0.69 0.92808
Target:  5'- -aACUGGuGAgCACGCCGUGCGaacAGGg -3'
miRNA:   3'- uaUGGCCuUUgGUGCGGUACGUc--UCC- -5'
9045 5' -53.6 NC_002512.2 + 99916 0.69 0.942727
Target:  5'- -cGCCGGggGCC-CGCCGaaggGCGGcgucGGc -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa---CGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 142038 0.69 0.930156
Target:  5'- -gGCCGGcGACCcgccgcgagggcccgACGCCcgGcCGGGGGa -3'
miRNA:   3'- uaUGGCCuUUGG---------------UGCGGuaC-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 30272 0.69 0.933198
Target:  5'- -cGCgCGGAGcCgGCGCCAUGgaGGAGGc -3'
miRNA:   3'- uaUG-GCCUUuGgUGCGGUACg-UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 95922 0.69 0.93664
Target:  5'- -gAUCGGAaaguccuugaccuuGAUCGCGCCcuccgGCGGGGGg -3'
miRNA:   3'- uaUGGCCU--------------UUGGUGCGGua---CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 101437 0.69 0.942727
Target:  5'- -gGCCGGcggcgcGGCgACGCCGagaGCGGGGGg -3'
miRNA:   3'- uaUGGCCu-----UUGgUGCGGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 215132 0.69 0.922727
Target:  5'- -gGCCGGGGuCCGCGCgAcgGgGGAGGc -3'
miRNA:   3'- uaUGGCCUUuGGUGCGgUa-CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 227910 0.69 0.921074
Target:  5'- -gGCCGGAGAcggacgcgccgccuCCgACGCCGgcggacgagGCGGGGGa -3'
miRNA:   3'- uaUGGCCUUU--------------GG-UGCGGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 162531 0.69 0.916564
Target:  5'- cUACUGGGGACCACcgugaaccgacugGCUAUGCcguguGGGGa -3'
miRNA:   3'- uAUGGCCUUUGGUG-------------CGGUACGu----CUCC- -5'
9045 5' -53.6 NC_002512.2 + 220365 0.69 0.917136
Target:  5'- -gGCCGuGGccGCCGcCGCCGUGCuGGGGc -3'
miRNA:   3'- uaUGGC-CUu-UGGU-GCGGUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 175575 0.69 0.922727
Target:  5'- uGUACCGGcgggucACCAcguCGCCGUGCGGGu- -3'
miRNA:   3'- -UAUGGCCuu----UGGU---GCGGUACGUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.