miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 158979 0.69 0.942727
Target:  5'- --uUCGGcgGCCACGgCGggGCGGAGGc -3'
miRNA:   3'- uauGGCCuuUGGUGCgGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 157797 0.66 0.985187
Target:  5'- -aACCGGGcgguGugCAgGUCGcUGCGGGGGc -3'
miRNA:   3'- uaUGGCCU----UugGUgCGGU-ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 155806 0.68 0.962524
Target:  5'- cUGCCucgaGGAGGCCGUGuCCGUGCAGAu- -3'
miRNA:   3'- uAUGG----CCUUUGGUGC-GGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 154538 0.7 0.88501
Target:  5'- cUACCGGuccGCCGCcuccgccucggucGCCAUGgGGGGGc -3'
miRNA:   3'- uAUGGCCuu-UGGUG-------------CGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 149521 0.68 0.962524
Target:  5'- -gGCCGGAGcggGCCG-GCCAggaGGAGGa -3'
miRNA:   3'- uaUGGCCUU---UGGUgCGGUacgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 149475 0.68 0.959012
Target:  5'- -cGCCGacAGCCACGCCAccauCGGGGGc -3'
miRNA:   3'- uaUGGCcuUUGGUGCGGUac--GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 149415 0.66 0.988343
Target:  5'- -gGCCgcgaGGGGACCGCGgCGggggcgggcGCGGGGGg -3'
miRNA:   3'- uaUGG----CCUUUGGUGCgGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 147380 1.09 0.006861
Target:  5'- aAUACCGGAAACCACGCCAUGCAGAGGa -3'
miRNA:   3'- -UAUGGCCUUUGGUGCGGUACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 144569 0.67 0.965822
Target:  5'- -aACCGGcGACCuACGUCGaGCGGcAGGc -3'
miRNA:   3'- uaUGGCCuUUGG-UGCGGUaCGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 142280 0.7 0.892442
Target:  5'- -gGCCGGGGACgGCGUCGa-CGGGGGa -3'
miRNA:   3'- uaUGGCCUUUGgUGCGGUacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 142038 0.69 0.930156
Target:  5'- -gGCCGGcGACCcgccgcgagggcccgACGCCcgGcCGGGGGa -3'
miRNA:   3'- uaUGGCCuUUGG---------------UGCGGuaC-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 141749 0.71 0.879436
Target:  5'- -gGgCGGAucguccccuacauccGCCGCGCCGUGCAGgacAGGa -3'
miRNA:   3'- uaUgGCCUu--------------UGGUGCGGUACGUC---UCC- -5'
9045 5' -53.6 NC_002512.2 + 140038 0.66 0.988343
Target:  5'- -cACCGcacgcaGAACCGgGCCGUGCAGcgcGGu -3'
miRNA:   3'- uaUGGCc-----UUUGGUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 139958 0.74 0.712753
Target:  5'- uGUACCGGAGucgcGCCAUGCCcUGCAucgucugcguGGGGu -3'
miRNA:   3'- -UAUGGCCUU----UGGUGCGGuACGU----------CUCC- -5'
9045 5' -53.6 NC_002512.2 + 139260 0.67 0.965822
Target:  5'- -cGCCGGGucgcGCCGC-CCGgcgcGCGGGGGc -3'
miRNA:   3'- uaUGGCCUu---UGGUGcGGUa---CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 137364 0.71 0.87873
Target:  5'- -gGCCGGGuagauCCGCGCgGUcucccggaaGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuu---GGUGCGgUA---------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 136533 0.67 0.976974
Target:  5'- --cCCGGGAcugcACgCugGCCAUGCuGcAGGa -3'
miRNA:   3'- uauGGCCUU----UG-GugCGGUACGuC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 136211 0.67 0.968909
Target:  5'- -cGCCGGcgGCCugGUgc-GCGGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGugCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 135799 0.73 0.779944
Target:  5'- --gUCGGAccGGCCGcCGCCGUcGCGGGGGg -3'
miRNA:   3'- uauGGCCU--UUGGU-GCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 134206 0.68 0.947141
Target:  5'- -cGCCGGAGGCCcggcggacgcGCGCUcacgagaggcuGUGCcGGGGg -3'
miRNA:   3'- uaUGGCCUUUGG----------UGCGG-----------UACGuCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.