miRNA display CGI


Results 41 - 60 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 93710 0.66 0.986838
Target:  5'- --cCCGGcGACCcCGCCGcGCGGcGGa -3'
miRNA:   3'- uauGGCCuUUGGuGCGGUaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 129018 0.68 0.962524
Target:  5'- -gGCCGGGAggaguucgaACCG-GCCGUGCGGGu- -3'
miRNA:   3'- uaUGGCCUU---------UGGUgCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 207431 0.7 0.892442
Target:  5'- cUGCaCGGAGAUCugGCCGUaguagcccaGCGGAuGGg -3'
miRNA:   3'- uAUG-GCCUUUGGugCGGUA---------CGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 220365 0.69 0.917136
Target:  5'- -gGCCGuGGccGCCGcCGCCGUGCuGGGGc -3'
miRNA:   3'- uaUGGC-CUu-UGGU-GCGGUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 162130 0.68 0.962524
Target:  5'- -cGCCGGAGACgAC-CCcgGCucgcGAGGc -3'
miRNA:   3'- uaUGGCCUUUGgUGcGGuaCGu---CUCC- -5'
9045 5' -53.6 NC_002512.2 + 101226 0.66 0.981418
Target:  5'- -cGCCGGGuuCCgGCGCCGgcaguucgagaUGCAGAa- -3'
miRNA:   3'- uaUGGCCUuuGG-UGCGGU-----------ACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 113134 0.66 0.988343
Target:  5'- --cUCGGAGACCGCGC---GCGGGGc -3'
miRNA:   3'- uauGGCCUUUGGUGCGguaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 92567 0.66 0.988343
Target:  5'- --gUCGGAGgcGCCgACGCCGcgGCcgGGAGGg -3'
miRNA:   3'- uauGGCCUU--UGG-UGCGGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 201710 0.66 0.979284
Target:  5'- -gAUCGGcgGCgGCGUCGUcgucGCGGGGGg -3'
miRNA:   3'- uaUGGCCuuUGgUGCGGUA----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 114132 0.67 0.968909
Target:  5'- -cACCGGu--CCGaggagcaGCCG-GCAGAGGa -3'
miRNA:   3'- uaUGGCCuuuGGUg------CGGUaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 222425 0.67 0.971793
Target:  5'- -gGCCGGcAGCCGCGCCGcgGCuucccccGGGc -3'
miRNA:   3'- uaUGGCCuUUGGUGCGGUa-CGuc-----UCC- -5'
9045 5' -53.6 NC_002512.2 + 182429 0.66 0.979284
Target:  5'- cUugCGGAAcucggccucgGCCucCGCCGUGCGGGcguGGu -3'
miRNA:   3'- uAugGCCUU----------UGGu-GCGGUACGUCU---CC- -5'
9045 5' -53.6 NC_002512.2 + 110412 0.66 0.985865
Target:  5'- -cGCCGGA--CCGCGCCuuccacuuccgcccgAUcuagagGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuuGGUGCGG---------------UA------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 224131 0.68 0.947141
Target:  5'- -gGCCGuGGAcCCGCGCCGggagGCGGAc- -3'
miRNA:   3'- uaUGGC-CUUuGGUGCGGUa---CGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 227968 0.68 0.951324
Target:  5'- -aGCCGGAGaggaggGCCccgGCGCCGaggGCcGAGGg -3'
miRNA:   3'- uaUGGCCUU------UGG---UGCGGUa--CGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 155806 0.68 0.962524
Target:  5'- cUGCCucgaGGAGGCCGUGuCCGUGCAGAu- -3'
miRNA:   3'- uAUGG----CCUUUGGUGC-GGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 228251 0.69 0.922178
Target:  5'- cGUGCCGGAcgcgggggcgacuGACCGCGgaCCGggugGgAGAGGg -3'
miRNA:   3'- -UAUGGCCU-------------UUGGUGC--GGUa---CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 147380 1.09 0.006861
Target:  5'- aAUACCGGAAACCACGCCAUGCAGAGGa -3'
miRNA:   3'- -UAUGGCCUUUGGUGCGGUACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 214161 0.7 0.885697
Target:  5'- cUACCGGGAccccuacgucgaGCC-CGUCAUcgucGCGGAGGa -3'
miRNA:   3'- uAUGGCCUU------------UGGuGCGGUA----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 215132 0.69 0.922727
Target:  5'- -gGCCGGGGuCCGCGCgAcgGgGGAGGc -3'
miRNA:   3'- uaUGGCCUUuGGUGCGgUa-CgUCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.