miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 99916 0.69 0.942727
Target:  5'- -cGCCGGggGCC-CGCCGaaggGCGGcgucGGc -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa---CGUCu---CC- -5'
9045 5' -53.6 NC_002512.2 + 47430 0.69 0.922727
Target:  5'- cUGCCacGAGcACCACGCCcgcacgGCGGAGGc -3'
miRNA:   3'- uAUGGc-CUU-UGGUGCGGua----CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 162531 0.69 0.916564
Target:  5'- cUACUGGGGACCACcgugaaccgacugGCUAUGCcguguGGGGa -3'
miRNA:   3'- uAUGGCCUUUGGUG-------------CGGUACGu----CUCC- -5'
9045 5' -53.6 NC_002512.2 + 130235 0.68 0.958649
Target:  5'- cUGCCGGGGAUCggcucggGCGCCggGCccuccGAGGg -3'
miRNA:   3'- uAUGGCCUUUGG-------UGCGGuaCGu----CUCC- -5'
9045 5' -53.6 NC_002512.2 + 174400 0.68 0.959012
Target:  5'- -cACCGuaAAACCACGCCucucccauauuGUGUAGAGa -3'
miRNA:   3'- uaUGGCc-UUUGGUGCGG-----------UACGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 119165 0.68 0.962524
Target:  5'- -aACaCGGcccuGGCCaACGCCAUGCAGcuGGc -3'
miRNA:   3'- uaUG-GCCu---UUGG-UGCGGUACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 149475 0.68 0.959012
Target:  5'- -cGCCGacAGCCACGCCAccauCGGGGGc -3'
miRNA:   3'- uaUGGCcuUUGGUGCGGUac--GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 120768 0.68 0.962524
Target:  5'- cGUGCUGGAcuCgGCgGCCGUcgGCGGGGGc -3'
miRNA:   3'- -UAUGGCCUuuGgUG-CGGUA--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 46095 0.68 0.95528
Target:  5'- --cCCGGGucACCGCGaCAaagGCGGAGGg -3'
miRNA:   3'- uauGGCCUu-UGGUGCgGUa--CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 162130 0.68 0.962524
Target:  5'- -cGCCGGAGACgAC-CCcgGCucgcGAGGc -3'
miRNA:   3'- uaUGGCCUUUGgUGcGGuaCGu---CUCC- -5'
9045 5' -53.6 NC_002512.2 + 129018 0.68 0.962524
Target:  5'- -gGCCGGGAggaguucgaACCG-GCCGUGCGGGu- -3'
miRNA:   3'- uaUGGCCUU---------UGGUgCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 98931 0.68 0.962524
Target:  5'- -gACCgGGGAGCCAgaGCCGgaUGCAGucGGg -3'
miRNA:   3'- uaUGG-CCUUUGGUg-CGGU--ACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 131871 0.68 0.951324
Target:  5'- -gGCCGGAGACgGggaGCCGgagggGgAGAGGg -3'
miRNA:   3'- uaUGGCCUUUGgUg--CGGUa----CgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 99960 0.68 0.947141
Target:  5'- gGUGCCuGAucGGCCugGCCccGCGGuGGc -3'
miRNA:   3'- -UAUGGcCU--UUGGugCGGuaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 155806 0.68 0.962524
Target:  5'- cUGCCucgaGGAGGCCGUGuCCGUGCAGAu- -3'
miRNA:   3'- uAUGG----CCUUUGGUGC-GGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 129833 0.68 0.962524
Target:  5'- -cGCCGcc-GCCcccgcgucucaGCGCCcgGCGGAGGa -3'
miRNA:   3'- uaUGGCcuuUGG-----------UGCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 134206 0.68 0.947141
Target:  5'- -cGCCGGAGGCCcggcggacgcGCGCUcacgagaggcuGUGCcGGGGg -3'
miRNA:   3'- uaUGGCCUUUGG----------UGCGG-----------UACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 14622 0.68 0.947141
Target:  5'- aGUGgCGGAGGCCGCGCUu----GAGGa -3'
miRNA:   3'- -UAUgGCCUUUGGUGCGGuacguCUCC- -5'
9045 5' -53.6 NC_002512.2 + 98765 0.68 0.959012
Target:  5'- -cAUCGGGu-CCugGCCGU-CGGGGGg -3'
miRNA:   3'- uaUGGCCUuuGGugCGGUAcGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 226748 0.68 0.95528
Target:  5'- -gACCGGGcuCCG-GCCGgacgacGCGGAGGg -3'
miRNA:   3'- uaUGGCCUuuGGUgCGGUa-----CGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.